PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874055.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 195aa    MW: 21521.6 Da    PI: 9.671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00115577123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  XP_015874055.1 55 FVCKTCNRQFNSFQALGGHRASH 77
                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-853124No hitNo description
PfamPF139123.8E-125479IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8475582IPR007087Zinc finger, C2H2
SMARTSM003550.215577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PfamPF139122.4E-9101125IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494102131IPR007087Zinc finger, C2H2
SMARTSM003550.5102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGFKRIREDG EMEPLDVVKC LMLLSKVGNN NNNNNNSQND VVVAKKQSSS PGRVFVCKTC  60
NRQFNSFQAL GGHRASHKKP KLMTGDHVND QLPSSPVKPK THECSICGLE FAIGQALGGH  120
MRRHRHATED GGVTDRHHDQ QPSLPVLKKS SSSKRVMCLD LDLDLNLAPP GGNDDLKLRL  180
VTPTVDSFVY KSLKI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874055.11e-143zinc finger protein ZAT12
TrEMBLA0A2P5AQ432e-59A0A2P5AQ43_TREOI; TFIIH C1-like domain containing protein
STRINGXP_008357752.12e-56(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-31C2H2 family protein