PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874038.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 722aa MW: 80962.5 Da PI: 7.0055

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	363.1	3.9e-111	351	720	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+a +s d+ a++lL++++e++s +gd++qR+a+yf+ +L+arl + + +++p ++ + +e l a++lf ++P+ ++s++ XP_015874038.1 351 TLLTQCAQAAASYDQITATKLLKQIREHSSVEGDATQRVAHYFASGLEARLEGIRTP---SFTPHVRNHVSPAEILEAYHLFLTACPFKRMSNFF 442 69*************************************************2222...23344444455899***************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN++Il+ +++++r+HiiDf+i G+QWp+L+q L++Rp+gpp+lRiTg++ p++g + ++e +rL++++++++vp+ef++ +a+++e ++ XP_015874038.1 443 ANRTILKLAQKATRIHIIDFGILFGFQWPCLIQHLSKRPGGPPKLRITGIELPQPGfrPSATVEGAVHRLKNYCKRFNVPVEFKI-IAQKWEIIQ 536 ***************************************************999999*******************9.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L+++++E +aVn+ +l++++de+v +++rd+vLkl++s++P+v++ + ns+ Fl+rf eal +y +lfd+l+a++pre+++r++ XP_015874038.1 537 VEDLNIDRDEFTAVNCLSRLKHIPDETVMPNNPRDTVLKLIRSMNPDVFITGVINGTFNSPFFLTRFKEALFHYFTLFDMLDASVPRENKARMNF 631 ******************************************************************************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Er++ g+ei+nv+ cegaer+ r et+++W++r+++aGFk+++ ++++++++k++++ + + + v e+ ++l++gWk+r +++++W+ XP_015874038.1 632 ERAIYGKEIMNVIGCEGAERIVRPETYKQWQARITNAGFKQMTPNQDIVEKIKSMVKLGYHKNFVVAEQGQWLLQGWKGRICLALTSWK 720 ********************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.142	323	700	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-108	351	720	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MNGFKFNHVP VSDYSICSSS DSESVPSRPS NVPTNLLHGR ESTSTSTSTS TLISTTTSSS 60 SISEADSMDV GDSSNAMLKF INEMLMEEEL DGKLEDSLAL QVAEKSFYDV LGQKYPPSPI 120 QAPFSGSFKN VDKLVDRIPL RFGISEKDYY QSGYSSKDSI AANTSGVHDQ DGYEYSEVQT 180 SLSEPQVCTR SVPYSFSDLQ SFGNFRGGTG KSSSVIIPST KFGTIDMERN PLSMTAGHGE 240 NVVDMPEERN NLPTGSRAKR NHQLDHGGGN LEGRDNKHSA VYADGLSDLQ EMFDKVLLNH 300 GDDDESNALL GFSHVEGHRK LQHIEQAKES GKKTRSKEVQ NKEEEMVDLW TLLTQCAQAA 360 ASYDQITATK LLKQIREHSS VEGDATQRVA HYFASGLEAR LEGIRTPSFT PHVRNHVSPA 420 EILEAYHLFL TACPFKRMSN FFANRTILKL AQKATRIHII DFGILFGFQW PCLIQHLSKR 480 PGGPPKLRIT GIELPQPGFR PSATVEGAVH RLKNYCKRFN VPVEFKIIAQ KWEIIQVEDL 540 NIDRDEFTAV NCLSRLKHIP DETVMPNNPR DTVLKLIRSM NPDVFITGVI NGTFNSPFFL 600 TRFKEALFHY FTLFDMLDAS VPRENKARMN FERAIYGKEI MNVIGCEGAE RIVRPETYKQ 660 WQARITNAGF KQMTPNQDIV EKIKSMVKLG YHKNFVVAEQ GQWLLQGWKG RICLALTSWK 720 PA

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MNGFKFNHVP VSDYSICSSS DSESVPSRPS NVPTNLLHGR ESTSTSTSTS TLISTTTSSS  60
SISEADSMDV GDSSNAMLKF INEMLMEEEL DGKLEDSLAL QVAEKSFYDV LGQKYPPSPI  120
QAPFSGSFKN VDKLVDRIPL RFGISEKDYY QSGYSSKDSI AANTSGVHDQ DGYEYSEVQT  180
SLSEPQVCTR SVPYSFSDLQ SFGNFRGGTG KSSSVIIPST KFGTIDMERN PLSMTAGHGE  240
NVVDMPEERN NLPTGSRAKR NHQLDHGGGN LEGRDNKHSA VYADGLSDLQ EMFDKVLLNH  300
GDDDESNALL GFSHVEGHRK LQHIEQAKES GKKTRSKEVQ NKEEEMVDLW TLLTQCAQAA  360
ASYDQITATK LLKQIREHSS VEGDATQRVA HYFASGLEAR LEGIRTPSFT PHVRNHVSPA  420
EILEAYHLFL TACPFKRMSN FFANRTILKL AQKATRIHII DFGILFGFQW PCLIQHLSKR  480
PGGPPKLRIT GIELPQPGFR PSATVEGAVH RLKNYCKRFN VPVEFKIIAQ KWEIIQVEDL  540
NIDRDEFTAV NCLSRLKHIP DETVMPNNPR DTVLKLIRSM NPDVFITGVI NGTFNSPFFL  600
TRFKEALFHY FTLFDMLDAS VPRENKARMN FERAIYGKEI MNVIGCEGAE RIVRPETYKQ  660
WQARITNAGF KQMTPNQDIV EKIKSMVKLG YHKNFVVAEQ GQWLLQGWKG RICLALTSWK  720
PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-49	353	720	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874038.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024926109.1	0.0	scarecrow-like protein 11
TrEMBL	A0A251NLI9	0.0	A0A251NLI9_PRUPE; Uncharacterized protein
STRING	EMJ09694	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-158	GRAS family protein