PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873832.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 382aa    MW: 42540.4 Da    PI: 8.6531
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021145168123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F  + +L +H+ + H
  XP_015873832.1 145 FPCTTCGEIFQKPQLLDQHQAVkH 168
                     89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.577145173IPR007087Zinc finger, C2H2
PROSITE patternPS000280147168IPR007087Zinc finger, C2H2
SuperFamilySSF563993.55E-13170381No hitNo description
Gene3DG3DSA:3.90.228.102.7E-5181287IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.101.6E-4317381IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAAYSSIFNK FLSFFIILVH LGCFLFTTTT TTDDGKERHH QPSKKRKLSV RCNSSPNNKT  60
THKAFSSSWS FLKRIFSSKS CKSSIQTHPS TPARSSQHSI VSVVLPETDP ISDPSLRKNS  120
STGSCPESDI SSRDNLFFPL RNDIFPCTTC GEIFQKPQLL DQHQAVKHAV SELIDGDSGK  180
NIVQIIFKTG WTDNKRSPII SRILKIHNSP KILTRFEEYR EAVKAKATRN GAVRKRDERC  240
IADGNELLRF HCSTFLCDLG QKGNSSICNQ QYCSVCGIIK SGFSPKLDGI STLSTSWRAH  300
VAIPEDIEEE FKFMNVKRAM LVCRVVAGGI GSESDEVEKE DGGFDSVFGR GGSGVHTRLD  360
EDELLVFNPR AVLPCFVIVY TV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873832.20.0LOW QUALITY PROTEIN: uncharacterized protein LOC107410860
TrEMBLW9RPJ20.0W9RPJ2_9ROSA; Uncharacterized protein
STRINGXP_010104669.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-123C2H2 family protein