PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872758.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 355aa    MW: 38595.6 Da    PI: 6.6383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20210259255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_015872758.1 210 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 259
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-33210268IPR001471AP2/ERF domain
SMARTSM003806.3E-37210273IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22210268IPR016177DNA-binding domain
PfamPF008472.9E-14210259IPR001471AP2/ERF domain
PROSITE profilePS5103225.712210267IPR001471AP2/ERF domain
PRINTSPR003678.6E-12211222IPR001471AP2/ERF domain
CDDcd000189.27E-16218269No hitNo description
PRINTSPR003678.6E-12233249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MCLLKVANKR DLDDQFIRFQ ADQDQQHDEE ETSELVYSQS HELINPTQSS SLAYHPQYVS  60
LMPPPPPQPS TIFSGYSRPT EMSAMVSALT HVVSGQRGYG IGLSSSSSSS SSPSPSPSSG  120
SSIGQKRGRE DNIGAASSQL LLESSSRAYR VGLAPHDFGA TQQGAESSPS ATGEEITNIM  180
SNPAATTTIV SPSPSSETAS YEESGERRRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF  240
DTAEAAARAY DEAALRFRGN RAKLNFPENV RLLPPPAQTL QAVLPAAVSS TPASVITQVQ  300
PNPTPRPPPQ PLQSVPFFNP QQFQSHPDVL RDYLQYSQLL QSSGGDFNGG QQQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23209270163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872758.10.0ethylene-responsive transcription factor ABR1-like, partial
TrEMBLA0A2K2AJ342e-68A0A2K2AJ34_POPTR; Uncharacterized protein
STRINGPOPTR_0005s21690.19e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.14e-21ERF family protein