PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872349.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 336aa    MW: 38054.9 Da    PI: 8.0942
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05172191120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C++C+k+F+r  n++ H+
  XP_015872349.1 172 FACSICSKTFNRYNNMQMHM 191
                     78*****************9 PP
2zf-C2H216.13.2e-05256278123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  k + ++H +++
  XP_015872349.1 256 FMCRKCGKTFAVKGDWRTHEKNC 278
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-5163195No hitNo description
SMARTSM003550.17172194IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-5172191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-4172191IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.741172199IPR007087Zinc finger, C2H2
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SMARTSM00355190219251IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-6242276No hitNo description
Gene3DG3DSA:3.30.160.606.3E-6252276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035535256276IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGLWKQLVED KNLCFQSPTF IEWLKPSSSP SSSSLSSSSY SSWSDLTPDE DLAGETMQCL  60
PLLSRFSAET KPLKVEDTGA QREEEGGFGI KKEEHIAEKV TVALHIGLPN TSGSVDQEYE  120
KKVDDHDDLK EQQQQQAAKK SFQLYGSSST FNMDSRFWIP TPAQILVGPM QFACSICSKT  180
FNRYNNMQMH MWGHGSEYRK GPDSLRGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF  240
RTLQTHYKRK HGVKPFMCRK CGKTFAVKGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI  300
RSFGKGHSPH PSLDGFEDEK ECVTTGTSDE DEFARP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872349.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872349.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-122ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2I4F4G71e-166A0A2I4F4G7_JUGRE; zinc finger protein WIP3-like
STRINGXP_009342737.11e-166(Pyrus x bretschneideri)
STRINGXP_010089843.11e-165(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-119WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]