PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015872131.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 138aa MW: 15711.8 Da PI: 9.8169 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.3 | 1.7e-33 | 18 | 72 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl XP_015872131.1 18 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 72 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-32 | 15 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.455 | 15 | 75 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.7E-25 | 18 | 73 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 7.17E-17 | 18 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-9 | 20 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.9E-8 | 118 | 138 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 138 aa Download sequence Send to blast |
MERNFGYENG VVMTRDPKPR LRWTADLHDR FVDAVTKLGG PDKATPKSVL RLMGLKGLTL 60 YHLKSHLQKY RLGQQARRQN PSEQTRDING GSYVQFSNNS PGTSTNSSRC DLDQAEIPIA 120 EALRCQIEVQ KRLQEQLE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-21 | 18 | 71 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-21 | 18 | 71 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-21 | 18 | 71 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-21 | 18 | 71 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015872131.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX578082 | 1e-31 | JX578082.1 Gossypium hirsutum clone NBRI_GE10029 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015872131.1 | 1e-100 | myb family transcription factor PHL11-like, partial | ||||
Refseq | XP_015901330.1 | 1e-100 | myb family transcription factor PHL11 isoform X1 | ||||
Swissprot | C0SVS4 | 4e-60 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A2I4H7R8 | 4e-77 | A0A2I4H7R8_JUGRE; myb family transcription factor PHL11 | ||||
STRING | EOY25282 | 3e-75 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-54 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|