PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G45580.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 264aa MW: 29472.2 Da PI: 8.9299

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G45580.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.5e-33	7	61	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl AT5G45580.1 7 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 61 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.285	4	64	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-31	4	63	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-24	7	62	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.97E-16	7	64	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-9	9	60	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-19	112	157	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MMTRDPKPRL RWTADLHDRF VDAVAKLGGA DKATPKSVLK LMGLKGLTLY HLKSHLQKYR 60 LGQQQGKKQN RTEQNKENAG SSYVHFDNCS QGGISNDSRF DNHQRQSGNV PFAEAMRHQV 120 DAQQRFQEQL EVQKKLQMRM EAQGKYLLTL LEKAQKSLPC GNAGETDKGQ FSDFNLALSG 180 LVGSDRKNEK AGLVTDISHL NGGDSSQEFR LCGEQEKIET GDACVKPESG FVHFDLNSKS 240 GYDLLNCGKY GIEVKPNVIG DRLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-20	7	60	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	7	60	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	7	60	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	7	60	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	79530150	0.0
Expression Atlas	AT5G45580	-
AtGenExpress	AT5G45580	-

Function -- GeneRIF ? help Back to Top
These results provide new insight into the regulatory control of phenylpropanoid metabolism at low temperatures, and reveal that BEE1 and GFR act as important components of the signal transduction chain.[GFR] [PMID: 27125220]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G45580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G45580

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT012003	0.0	BT012003.1 Arabidopsis thaliana At5g45580 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_199371.2	0.0	Homeodomain-like superfamily protein
Swissprot	C0SVS4	0.0	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A178UFW4	0.0	A0A178UFW4_ARATH; Uncharacterized protein
STRING	AT5G45580.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30
Representative plant	OGRP78	17	262

Link Out ? help Back to Top
Phytozome	AT5G45580.1
Entrez Gene	834596
iHOP	AT5G45580
wikigenes	AT5G45580

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Hanada K, et al. Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. Mol. Biol. Evol., 2011. 28(1): p. 377-82 [PMID:20736450] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]