PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871773.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 310aa    MW: 34273.6 Da    PI: 6.3012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026132154123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_015871773.1 132 FSCNYCQRKFYSSQALGGHQNAH 154
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-6128159No hitNo description
PROSITE profilePS5015711.427132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKIQLPEPCP SESSSIISVS EALPPSSIQV SMDIQKQRNQ PEEEEVEEQQ EQDGDGDEEE  60
KVKKAEEGDH EDHNKHQEES KNSHLVLDLS LSNEDSKPEL NLIDSFESNS SRNSSDTDTH  120
PHQGNETEPR VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKRGHKIGIA STAFGFPTSL  180
PHRYSSIASL PLHGSFNKSL GIQVHSMIHK PAYQPNTNTV ATSHLYGRNG WLRFPIDQQP  240
AIGRHVLENL HVGTALGSSS SSTGGAARFE TARKFSQATE GTGGGFCWNS VGFSKTKQDE  300
LQKLDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871773.10.0zinc finger protein 1
TrEMBLA5BQW11e-100A5BQW1_VITVI; Uncharacterized protein
STRINGVIT_09s0002g09080.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-40zinc-finger protein 1