PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 242aa MW: 27441.3 Da PI: 10.122 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.5e-06 | 51 | 74 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC+ f G C yG +C+FaHg XP_015871151.1 51 KSQLCKKFKY-GSCTYGYKCRFAHG 74 7789999987.*************8 PP | |||||||
2 | zf-CCCH | 28.3 | 3.1e-09 | 155 | 181 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC ++ rt C yG C+FaHg+ XP_015871151.1 155 FKTKLCYNWDRTRNCAYGRDCCFAHGR 181 69***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-12 | 45 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-7 | 48 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-6 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.652 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-12 | 150 | 185 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-8 | 153 | 185 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.061 | 154 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.035 | 154 | 181 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-7 | 155 | 181 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MTNKSVRTDT PQLFAPNLES MSAIECQSFK NPSIPKVASN SRIPMAQNNF KSQLCKKFKY 60 GSCTYGYKCR FAHGSADVRR PLLRSQGVLN EKDRLELPKT FRHRNGNVRE EWAIAIDTST 120 GSTESHITGS SRLEGKRWVN RNLDANRLNP KPVIFKTKLC YNWDRTRNCA YGRDCCFAHG 180 RAEMQKFSGH TSLGCGISQP TIPKTCDGAK NALSCRTGLE LQDLKFTWSE LGRMSRIYAD 240 WI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871151.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868336.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
Refseq | XP_015871151.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-14 | C3H family protein |