PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015870520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 39812.4 Da PI: 4.5976 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 52.7 | 1.4e-16 | 17 | 117 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 td+el L+k ++g++l+ + ++ y+++P +Lp v +++fF + +++ + +r +sg+Wk++g+ e++s +++ +g + XP_015870520.1 17 TDKELF-MSLEKMMAGSPLPD--NVLPLNPYDIKPDNLP--V-----DIWFFNQPNEN-----KDTR--SSGRWKTKGEACELFS-NSSFIGWRS 93 899999.55999999999877..577789*********9..2.....34566655443.....3456..489*************.999****** PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 tL fy+g+ap+ +ktdWvm+ey + XP_015870520.1 94 TLEFYEGQAPHEHKTDWVMQEYWI 117 **********************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.749 | 8 | 139 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-9 | 17 | 115 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.19E-20 | 17 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MSLSKASPSA DISLYCTDKE LFMSLEKMMA GSPLPDNVLP LNPYDIKPDN LPVDIWFFNQ 60 PNENKDTRSS GRWKTKGEAC ELFSNSSFIG WRSTLEFYEG QAPHEHKTDW VMQEYWITLR 120 LSEDVSAMGP CSLCRVFLVQ NADTASHSTE SVVQNAENYV GQSSSSRQQV NKTGNLSVRE 180 RIPVENAPEI DYVSRGDYME LLDLDTPVSP SSSSDSSCVT MSSNECFDSL ALLQDLEPET 240 NNEPVQKDAG CKFNIAASIK PTEVVICPAF SGTLDKSPNE QVPGTDRSTP GSALLSQISD 300 KNNLKNPSGN QKPDFRNEGT SSNSERLAAT CSSYMAAPRE EKKPSIARKG SLKKYCCCLP 360 F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015870520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870520.1 | 0.0 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A2P5FZE7 | 1e-113 | A0A2P5FZE7_TREOI; NAC domain containing protein | ||||
STRING | XP_010106034.1 | 1e-110 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10588 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-16 | NAC domain containing protein 83 |