PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870406.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 806aa    MW: 89657.2 Da    PI: 4.7506
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.3e-5291431127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+++yL+ k++g++ ++ +vi+evd++k+ePwdLp  + +k+e+ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++
  XP_015870406.1   9 LPLGFRFRPTDEELINHYLRLKINGRHSDV-QVIPEVDVCKWEPWDLPrlSVIKTEDPEWFFFCPRDRKYPNGQRSNRATDAGYWKATGKDRTIK 102
                     699************************999.99***************5337888889************************************* PP

             NAM  94 sk.......kgelvglkktLvfykgrapkgektdWvmheyr 127
                     s+       ++ l+g+kktLvfy+grapkge+t+W+mheyr
  XP_015870406.1 103 SRncksasnTNGLIGMKKTLVFYRGRAPKGERTHWIMHEYR 143
                     *977666554555***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-595167IPR003441NAC domain
PROSITE profilePS5100556.6149167IPR003441NAC domain
PfamPF023654.8E-2710143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MRVASLESLP LGFRFRPTDE ELINHYLRLK INGRHSDVQV IPEVDVCKWE PWDLPRLSVI  60
KTEDPEWFFF CPRDRKYPNG QRSNRATDAG YWKATGKDRT IKSRNCKSAS NTNGLIGMKK  120
TLVFYRGRAP KGERTHWIMH EYRPTLKDLD GTAHGQSPFV LCRLFRKPED KSDALKYDEV  180
DQTGLSPTAT KSSPDDTSSD LLQETATSDM QCEQSQGIKS WLTDNLDTIT PIARHVESCS  240
NSYMASDVED HVAEETPLQV ETELIPRVNS PFACDFGNDN NGMHFLDGTG EQDVSLTELL  300
DEVFHNNDDF FCEESTNVKN SVVASGQSCT LYNISPGSSR LNGACSDLNT EMAQHDLDIR  360
ASGWHNEPVD TKDMLQIQTL FGSSQADVAH VDREVSLGNN SDLRDNFFGQ GSFSGDSALG  420
SANGMSNSLE EATSRKYPVG YSGNHAGGTG IKIRTRQPQR QPILDNFVSQ GTAPRRIRLL  480
MNSSPGSILN VNVRDSNQRK EEEEVQSTDT EAREVTEQEE FVMSNNEEES MNRDDPGDIA  540
YGNAIKIRTR FPQQPPNSDN FGAQGVAPRR IRLQMNTLPR SVVNDDVRDV KQNKQEYGIR  600
QSAVTEAREE GTEEGSNFNE QEKNYDLIKS KEEAASKKKI INYDGGHDGE LIQPNLDDNM  660
NPGTAPGNGN VINENCGRKE DEVQSTIYDG IETTEPSSNS DGPDEESHFV KLDTSLKIEP  720
SREVSEESYR KLRLRAKGHN ILIKSSKMQE ATVSLFLNSS PPRHSIFSVG VLTIAVVIIA  780
VVILLVVSTG LWKALDIDIG AGAIGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-43816719168NAC domain-containing protein 19
3swm_B2e-43816719168NAC domain-containing protein 19
3swm_C2e-43816719168NAC domain-containing protein 19
3swm_D2e-43816719168NAC domain-containing protein 19
3swp_A2e-43816719168NAC domain-containing protein 19
3swp_B2e-43816719168NAC domain-containing protein 19
3swp_C2e-43816719168NAC domain-containing protein 19
3swp_D2e-43816719168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870406.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870406.10.0protein NTM1-like 9
TrEMBLA0A2P5FIU10.0A0A2P5FIU1_TREOI; NAC domain containing protein
STRINGEMJ115700.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-140NAC transcription factor-like 9