PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869863.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 1048aa    MW: 116645 Da    PI: 6.5931
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-2471172199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L++gD+v+F   +++
  XP_015869863.1  71 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfsM-QPPA-QEIVARDLHENVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLCAGDSVLFI--RDE 161
                     99*****************************954.4444.48************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  XP_015869863.1 162 KQQLLLGIRRA 172
                     8889****997 PP
2Auxin_resp119.91.9e-39197280183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++++GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_015869863.1 197 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQITLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 280
                     79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-4260200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-4063186IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-1870162No hitNo description
PROSITE profilePS5086311.98471173IPR003340B3 DNA binding domain
PfamPF023621.9E-2171172IPR003340B3 DNA binding domain
SMARTSM010191.7E-2371173IPR003340B3 DNA binding domain
PfamPF065071.1E-34197280IPR010525Auxin response factor
PfamPF023097.8E-79331020IPR033389AUX/IAA domain
PROSITE profilePS5174527.4299351019IPR000270PB1 domain
SuperFamilySSF542771.57E-69521014No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1048 aa     Download sequence    Send to blast
MKKDVDAQIP NYPNLPAKLL CLLHNVTLHA DPETDEVYAQ MTLQPVPSFD KEALLRSDLA  60
LKSNKPQPDF FCKTLTASDT STHGGFSVPR RAAEKIFPSL DFSMQPPAQE IVARDLHENV  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLC AGDSVLFIRD EKQQLLLGIR RANRQPPNLS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VIPLAKYYKA VYSNQITLGM  240
RFRMMFETEE SGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESTAGE RRNRVSIWEI  300
EPVTAPFFIC PPPFFRSKRP RQPGMPDDES DLDNLFKRTM PWLGDDICMK DPQPLSGLSL  360
VQWMNMQNPS MANSIQANYM HNFSGSVLSN LAGADLSRQL GLSVPQIPQA NNLQFNAQRL  420
PQQAQQLDQL PKLPSPLNHL GSIMQPQQQL SDVSQQPRQN MVNQTLPSSQ VQAQVLQPQT  480
LVQTNNILQQ QPSVQSHQLQ RNLSQNLQQQ QQPPMMSQNQ QQNVIQPQLP DQINQQLQHL  540
PDNQLQLQLL QKLQQQQQSL LAQQSSMQQP AQHTQVQEQQ RPLLDVSQSL SRPVTSSQML  600
ELPQTTPASL PQSNTITQQM IKNNNSQTNA RFSQTPHQQK LHQQQTGVIP ETMGNMGLTP  660
NPTTNHLTTA GSSVMTGAAG AGQSGITDDV PSCSTSPSTN NCPNVVQPVI NNRTHQSTLT  720
AEDMAQSAAT ILSPTALETM PSSANLVKDF HQKSEVKPSL NIPRNQCQGI FTPQTYLNGT  780
AAQTDYLDTS SSTSVCLSQN DVNLQQNPNP LSFNPQSMLF RESSQDGEVQ ADHRNNVSYG  840
NTIDGQLGIP LNPDPLLAKG FVGLGKDFPN NLSSGGVLGN YESSKDAQQE LSSSMVSQSF  900
GVPDMTFNSI DSTINDSSFL NRGPWPQPQQ FQRMRTYTKV YKRGAVGRSI DITRYTGYDE  960
LKQDLARRFG IEGQLEDRQR IGWKLVFVDH ENDVLLVGDD PWEEFVNCVR SIRILSPQEV  1020
QQMSLDGDFG GNIVLPNQAC SSSDGGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-144230189388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869863.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869863.10.0auxin response factor 19-like
TrEMBLW9RVN30.0W9RVN3_9ROSA; Auxin response factor
STRINGXP_010106948.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19