PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869557.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 1091aa    MW: 122799 Da    PI: 6.7323
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.3e-2270171199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_015869557.1  70 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldySMQPPA-QELVARDLHDNAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 161
                     99*****************************9545444.38************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_015869557.1 162 SQLLLGIRRA 171
                     7789999997 PP
2Auxin_resp125.24.4e-41196278183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_015869557.1 196 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 278
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-4460199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-4163185IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-1969170No hitNo description
PROSITE profilePS5086312.26670172IPR003340B3 DNA binding domain
SMARTSM010197.3E-2270172IPR003340B3 DNA binding domain
PfamPF023621.3E-2070171IPR003340B3 DNA binding domain
PfamPF065074.7E-36196278IPR010525Auxin response factor
PfamPF023094.3E-99611050IPR033389AUX/IAA domain
PROSITE profilePS5174525.3289641057IPR000270PB1 domain
SuperFamilySSF542771.47E-89771042No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MQKEADFLPS YPNLPSKLIC MLHNVTLHAD LETDEVYAQM TLQPVNKYDK EALLASDIGL  60
KHSRQPAEFF CKTLTASDTS THGGFSVPRR AAEKIFPALD YSMQPPAQEL VARDLHDNAW  120
TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDE KSQLLLGIRR ANRQQPALSS  180
SVISSDSMHI GILAAAAHAA ANNSPFTIFY NPRASPSEFV IPLAKYNKAM YTQVSLGMRF  240
RMMFETEESG VRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGERP SRVSIWEVEP  300
VVTPFYICPP PFFRPKFLKQ PGMPDDESDI ENAFKRAMPW LGDDLGMKDA SNSIFPGLSL  360
MQWMSMQQNN QFSAAQSGFF PSMVSPTTLQ SNVSTDDPSK LLSFSNPVPS GPSVQFNKAT  420
PQNQVNQVQQ PPVTWPQQQQ LHQLLQNPAN QQQHNYSQHQ LQQLLQSQPN QPPQNHSQQQ  480
QQQQQRQQHQ HQQQLQHQQQ QQTQQQPQQQ QQQICQPPLV NNAVVAPNQI PNQSLKQPAV  540
YSQLQQQQLL TGSTQSQQNV QPSKNSVQLT SLPQDSHFQQ QMELQTSLSA KQQPTQMQQN  600
PLQFLQQSLS QRAQQQPQVQ QLSQQGLSEQ QLQLLQKLQQ QQQQQQQQQQ QQQQQQQQQQ  660
QQQQQQLLSP QSSLLQPQML QQHQAHQQHP LQSLPLSQHH QQHQQQLSSN SFSAEKLLNV  720
HFSNSTLTPS QQIPVSQPQS HHKSPTAMRA NSGLTDGDAP SCSTSPSTNN CQVSPSNLLN  780
RNQQGQPILM SDSVVEPAVN LVQELQSKSD IRIKHEMPCS KGPDQLKYKG TITDQLEASS  840
SGTSYCLDAG AIQQSFPLPT FCLDGDVQSH PRNNIPFSAN IDGLPPDTLL SREYDSQKDL  900
QNLLSNYGGT PRDIETELST AAISSQSFGV PNLPFKPGCS NEVAINEAGV LSNGLWANQT  960
QRMRTYTKVQ KRGSVGRCID VTRYKGYDEL RHDLARMFGI EGQLEDPQRT DWKLVYVDHE  1020
NDILLVGDDP WEEFVNCVQS IKILSSAEVQ QMSLDGDLGN IPVPNQACSG TDSGNAWRGQ  1080
YDDNSAASFN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-148829996388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869557.10.0auxin response factor 7-like
TrEMBLA0A445IY090.0A0A445IY09_GLYSO; Auxin response factor
STRINGGLYMA15G19980.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19