PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868349.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 369aa    MW: 40923.4 Da    PI: 4.3643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20120170155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r++lg+++taeeAa  +++a+ kl+g
  XP_015868349.1 120 KKFRGVRQRP-WGKWAAEIRDPA----RrVRVWLGTYDTAEEAAMVYDNAAIKLRG 170
                     59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-33120177No hitNo description
SuperFamilySSF541711.05E-21121178IPR016177DNA-binding domain
PfamPF008473.3E-13121170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-30121178IPR001471AP2/ERF domain
SMARTSM003804.4E-39121184IPR001471AP2/ERF domain
PROSITE profilePS5103223.63121178IPR001471AP2/ERF domain
PRINTSPR003672.3E-10122133IPR001471AP2/ERF domain
PRINTSPR003672.3E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEQSILCPIK YTEHRKVTTM LTKPSKKSSL SSSEYSTGTG TVPRVVRISI TDPDATDSSS  60
DEEGELFCRQ RVKRYVNEVN IETGCKASIV ANNGRKRPAA EAPCRRPIKT SPTPNPSNGK  120
KFRGVRQRPW GKWAAEIRDP ARRVRVWLGT YDTAEEAAMV YDNAAIKLRG PDALTNFVTP  180
PPRENPDPEP ELNGGTSVSG YDSGEESRNV ASPTSVLHFR RQSNEEEEGG GAQKLLEAVH  240
EAEVCKPPSP TPPAIPEELV QECEGETNIA DDLGNYLPLD LPLDLSYLDN EFKFSAPESP  300
VLFESPFYLD DEEQETILEP LPEYILKEDF SDMFRDSYDL SSSSSSSGMC QGDDYFQEIL  360
FGSDPLVVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22117177162ATERF1
3gcc_A3e-22117177162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868349.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868349.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLW9R5J71e-142W9R5J7_9ROSA; Ethylene-responsive transcription factor CRF4
STRINGXP_010097869.11e-143(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-55cytokinin response factor 4