PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015868077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TCP | ||||||||
Protein Properties | Length: 195aa MW: 21239 Da PI: 8.7617 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.1 | 1.6e-34 | 38 | 110 | 7 | 66 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 ++++h+kv+gRdRR+Rl+a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++t++ s XP_015868077.1 38 HTKDRHAKVNGRDRRIRLPALCAARIFQLTRELGHKTDGQTIEWLLQQAEPSIIAATRNsystttastaptiS 110 69*********************************************************66554444443330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-30 | 38 | 105 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.582 | 39 | 93 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MRLENMNLDI SLLSSKEKPP KPHISQNPSN TKNLPCKHTK DRHAKVNGRD RRIRLPALCA 60 ARIFQLTREL GHKTDGQTIE WLLQQAEPSI IAATRNSYST TTASTAPTIS DPGPPLPPPT 120 AGSTDYCGSL SSCQGKSSTT STSGGCESKE FVKRFGVSRG ESGLPPFDFD LLTNFDMEFS 180 ANEIAMLRAV TETSK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015868077.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868077.1 | 1e-143 | transcription factor PCF1-like | ||||
Refseq | XP_015874524.1 | 1e-143 | transcription factor PCF1-like | ||||
TrEMBL | A0A061H0A3 | 1e-55 | A0A061H0A3_THECC; Transcription factor-like protein | ||||
STRING | EOY34434 | 2e-56 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 1e-28 | TCP family protein |