PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867737.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 204aa    MW: 22651.6 Da    PI: 7.7452
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.64.4e-151355345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    i  k nr v+fskRr+g++KKAeE   L++  +a+i++s+ g+
  XP_015867737.1 13 IGKKENRMVSFSKRRKGLIKKAEEFHSLTGSSIALIVISEAGR 55
                    67899***********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-16362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.754363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-18478IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-10525IPR002100Transcription factor, MADS-box
PfamPF003197.2E-171359IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-102540IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-104061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGKGKRKLPM ELIGKKENRM VSFSKRRKGL IKKAEEFHSL TGSSIALIVI SEAGRPSVYG  60
APSFDSVIHR FQLQRNNGIL LLTDSHTHTA PETLLIGDQG GSDQEINADF LGTHAYPDNN  120
VVMDQGGSKC EDCTTATTST PPETTHVAAS EPWRTWVDRK IRACQSIDDT VALKHHFSHL  180
KHAVDSRIVH SYLNTLENFL VFDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867737.11e-153floral homeotic protein AGAMOUS-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1648159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-16AGAMOUS-like 61