PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867533.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 365aa    MW: 42500.3 Da    PI: 8.9952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00161840123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C +Cg + s ks+   H+ tH
  XP_015867533.1 18 YFCDYCGICRSKKSLIAAHMLTH 40
                    78********************6 PP
2zf-C2H220.99.5e-076485223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +Cp Cg sF+   +Lk+H+++H
  XP_015867533.1 64 TCPECGVSFKKLAYLKQHMQSH 85
                    6*******************99 PP
3zf-C2H216.22.9e-0591115123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+  dC+ s++rk++L+rH+  H
  XP_015867533.1  91 YRCSveDCHSSYRRKDHLTRHLLQH 115
                     99*******************9887 PP
4zf-C2H2110.0014120145123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C+  F  + n+krH r  H
  XP_015867533.1 120 FKCPieNCNCEFAIQGNMKRHVRQlH 145
                     89********************9877 PP
5zf-C2H217.41.2e-05157181123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk+F+  s L++H  +H
  XP_015867533.1 157 YVCQeiGCGKVFRFASRLQKHEDSH 181
                     99*******************9888 PP
6zf-C2H218.27.1e-06248272223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C+ +Fs+ksnL++H +  H
  XP_015867533.1 248 KCNykGCDHTFSNKSNLQQHVKAvH 272
                     69999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355151840IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6631845IPR007087Zinc finger, C2H2
SMARTSM003550.00346385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.0696390IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-76484IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-1064115No hitNo description
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-1185117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01391115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.03491120IPR007087Zinc finger, C2H2
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576676.36E-7101160No hitNo description
Gene3DG3DSA:3.30.160.608.5E-5118142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017120145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.801120150IPR007087Zinc finger, C2H2
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-7150181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.43E-6152181No hitNo description
SMARTSM003550.009157181IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928157186IPR007087Zinc finger, C2H2
PROSITE patternPS000280159181IPR007087Zinc finger, C2H2
SMARTSM003551.3189214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
SMARTSM0035512217238IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.76E-8229285No hitNo description
Gene3DG3DSA:3.30.160.605.6E-6230269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.2E-4247272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.279247277IPR007087Zinc finger, C2H2
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-4271301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558278304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEEVDDIKKP IFRDIRRYFC DYCGICRSKK SLIAAHMLTH HKEEVDKART DGDGDTGGLK  60
ASNTCPECGV SFKKLAYLKQ HMQSHSLERP YRCSVEDCHS SYRRKDHLTR HLLQHQGKLF  120
KCPIENCNCE FAIQGNMKRH VRQLHDEDRP PTSEKQYVCQ EIGCGKVFRF ASRLQKHEDS  180
HVKLDSVEAF CSEPGCMKPF TNEQCLKAHL QSYHQHITCE ICGTKQLRKN IKRHLRTHDT  240
KDSTERVKCN YKGCDHTFSN KSNLQQHVKA VHLKRKPFAC GFSGCSMRFS YKHVREKHEK  300
TGAHVYIHGD FEETDEQFRS RPRGGRKRKY PTVEMLVRKR VTPPDQSKEG AEYLSWLAQE  360
IQGDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A4e-171824422190Aart
2i13_B4e-171824422190Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320328RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867533.10.0transcription factor IIIA isoform X1
RefseqXP_024924686.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-117TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2I4DN520.0A0A2I4DN52_JUGRE; transcription factor IIIA-like
STRINGXP_010104482.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-119transcription factor IIIA