PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867479.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 1092aa    MW: 122940 Da    PI: 6.7382
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.3e-2270171199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_015867479.1  70 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldySMQPPA-QELVARDLHDNAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 161
                     99*****************************9545444.38************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_015867479.1 162 SQLLLGIRRA 171
                     7789999997 PP
2Auxin_resp125.24.4e-41196278183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_015867479.1 196 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 278
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-4460199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-4163185IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-1969170No hitNo description
PROSITE profilePS5086312.26670172IPR003340B3 DNA binding domain
SMARTSM010197.3E-2270172IPR003340B3 DNA binding domain
PfamPF023621.3E-2070171IPR003340B3 DNA binding domain
PfamPF065074.7E-36196278IPR010525Auxin response factor
PfamPF023094.3E-99621051IPR033389AUX/IAA domain
PROSITE profilePS5174525.3289651058IPR000270PB1 domain
SuperFamilySSF542771.47E-89781043No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1092 aa     Download sequence    Send to blast
MQKETDFIPN YPNLPSKLIC MLHNVTLHAD LETDEVYAQM TLQPVNKYDK EALLASDIGL  60
KHSRQPAEFF CKTLTASDTS THGGFSVPRR AAEKIFPALD YSMQPPAQEL VARDLHDNAW  120
TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDE KSQLLLGIRR ANRQQPALSS  180
SVISSDSMHI GILAAAAHAA ANNSPFTIFY NPRASPSEFV IPLAKYNKAM YTQVSLGMRF  240
RMMFETEESG VRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGERP SRVSIWEVEP  300
VVTPFYICPP PFFRPKFLKQ PGMPDDESDI ENAFKRAMPW LGDDLGMKDA SNSIFPGLSL  360
MQWMSMQQNN QFSAAQSGFF PSMVSPTTLQ SNVSTDDPSK LLSFSNPVPS GPSVQFNKAT  420
PQNQVNQVQQ PPVTWPQQQQ LHQLLQNPAN QQQHNYSQHQ LQQLLQSQPN QPPQNHSQQQ  480
QQQRQQHQHH QEAQQLQQHQ HQQQLQHQQQ QQTQQQPQQQ QQQICQPPLV NNAVVAPNQI  540
PNQSLKQPAV YSQLQQQQLL TGSTQSQQNV QPSKNSVQLT SLPQDSHFQQ QMELQTSLSA  600
KQQPTQMQQN PLQFLQQSLS QRAQQQPQVQ QLSQQGLSEQ QLQLLQKLQQ QQQQQQQQQQ  660
QQQQQQQLLS PQSSLLQPQM LQQHQAHRQH PLQSLPLSQH HQQHQQQLSS NSFSAEKLLN  720
VHFSNSTLTP SQQIPVSQPQ SHHKSPTAMR ANSGLTDGDA PSCSTSPSTN NCQVSPSNLL  780
NRNQQGQPIL MSDSVVEPAV NLVQELQSKS DIRIKHEMPC SKGPDQLKYK GTITDQLEAS  840
SSGTSYCLDA GAIQQSFPLP TFCLDGDVQS HPQNNIPFSA NIDGLPPDTL LSREYDSQKD  900
LQNLLSNYGG TPRDIETELS TAAISSQSFG VPNLPFKPGC SNEVAINEAG VLSNGLWANQ  960
TQRMRTYTKV QKRGSVGRCI DVTRYKGYDE LRHDLARMFG IEGQLEDPQR TDWKLVYVDH  1020
ENDILLVGDD PWEEFVNCVQ SIKILSSAEV QQMSLDGDLG NIPVPNQACS GTDSGNAWRG  1080
QYDDNSAASF NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-149829996388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867478.10.0auxin response factor 19-like isoform X1
TrEMBLG7JS690.0G7JS69_MEDTR; Auxin response factor
STRINGAES921670.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19