PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867478.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 1148aa    MW: 128733 Da    PI: 6.7243
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.4e-22126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_015867478.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldySMQPPA-QELVARDLHDNAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217
                     99*****************************9545444.38************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_015867478.1 218 SQLLLGIRRA 227
                     7789999997 PP
2Auxin_resp125.14.7e-41252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_015867478.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-41119241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.87E-19125226No hitNo description
SMARTSM010197.3E-22126228IPR003340B3 DNA binding domain
PfamPF023621.4E-20126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266126228IPR003340B3 DNA binding domain
PfamPF065075.0E-36252334IPR010525Auxin response factor
PfamPF023094.5E-910181107IPR033389AUX/IAA domain
PROSITE profilePS5174525.32810211114IPR000270PB1 domain
SuperFamilySSF542771.57E-810341099No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1148 aa     Download sequence    Send to blast
MKAPSNGFLA TSGEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPNYPNL PSKLICMLHN VTLHADLETD EVYAQMTLQP VNKYDKEALL ASDIGLKHSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPALDYSMQ PPAQELVARD LHDNAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEVEPVVTP  360
FYICPPPFFR PKFLKQPGMP DDESDIENAF KRAMPWLGDD LGMKDASNSI FPGLSLMQWM  420
SMQQNNQFSA AQSGFFPSMV SPTTLQSNVS TDDPSKLLSF SNPVPSGPSV QFNKATPQNQ  480
VNQVQQPPVT WPQQQQLHQL LQNPANQQQH NYSQHQLQQL LQSQPNQPPQ NHSQQQQQQR  540
QQHQHHQEAQ QLQQHQHQQQ LQHQQQQQTQ QQPQQQQQQI CQPPLVNNAV VAPNQIPNQS  600
LKQPAVYSQL QQQQLLTGST QSQQNVQPSK NSVQLTSLPQ DSHFQQQMEL QTSLSAKQQP  660
TQMQQNPLQF LQQSLSQRAQ QQPQVQQLSQ QGLSEQQLQL LQKLQQQQQQ QQQQQQQQQQ  720
QQQLLSPQSS LLQPQMLQQH QAHRQHPLQS LPLSQHHQQH QQQLSSNSFS AEKLLNVHFS  780
NSTLTPSQQI PVSQPQSHHK SPTAMRANSG LTDGDAPSCS TSPSTNNCQV SPSNLLNRNQ  840
QGQPILMSDS VVEPAVNLVQ ELQSKSDIRI KHEMPCSKGP DQLKYKGTIT DQLEASSSGT  900
SYCLDAGAIQ QSFPLPTFCL DGDVQSHPQN NIPFSANIDG LPPDTLLSRE YDSQKDLQNL  960
LSNYGGTPRD IETELSTAAI SSQSFGVPNL PFKPGCSNEV AINEAGVLSN GLWANQTQRM  1020
RTYTKVQKRG SVGRCIDVTR YKGYDELRHD LARMFGIEGQ LEDPQRTDWK LVYVDHENDI  1080
LLVGDDPWEE FVNCVQSIKI LSSAEVQQMS LDGDLGNIPV PNQACSGTDS GNAWRGQYDD  1140
NSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1731535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867478.10.0auxin response factor 19-like isoform X1
TrEMBLG7JS690.0G7JS69_MEDTR; Auxin response factor
STRINGAES921670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19