PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867035.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 335aa    MW: 37240.8 Da    PI: 6.8375
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.4e-34188245259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  XP_015867035.1 188 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSTVITTYEGQHNHP 245
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-35172247IPR003657WRKY domain
SuperFamilySSF1182908.11E-30179247IPR003657WRKY domain
PROSITE profilePS5081132.799182247IPR003657WRKY domain
SMARTSM007741.8E-39187246IPR003657WRKY domain
PfamPF031063.2E-26188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSDELKDLYY DPFQDDGQNQ KLVNIPPISG SSSMGAGYNN NNLQGFDQYP PSSYTSFTDC  60
LQGAAGSAMD YNSIAMAFGL SPSSSEVFSS IEGNNNQKQF DLGDHLSGAS HENPVTPNSS  120
VSYSSTEAGL EEDSEKSNKD SNQQKGSDDG GSDNSKNKVN KLAKKKGEKK QKEPRFAFMT  180
KSEVDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTTQKCTV KKRVERSFQD PSTVITTYEG  240
QHNHPIPATL RGNAAAMFHS SMLTTPTSVS SFSQEMLFQM NSQQQGGAAG SIFSQQNVNP  300
LNHHYNHHHH HHHQIPDYGL LQDMVPSSMF LKHEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271802481078Probable WRKY transcription factor 4
2lex_A2e-271802481078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867035.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867035.10.0probable WRKY transcription factor 71 isoform X1
RefseqXP_015876832.10.0probable WRKY transcription factor 71
TrEMBLA0A0D2S1Y11e-112A0A0D2S1Y1_GOSRA; Uncharacterized protein
STRINGGorai.009G157300.11e-113(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-57WRKY DNA-binding protein 28