PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866356.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 494aa    MW: 54753 Da    PI: 9.7036
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.1e-091792161954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  XP_015866356.1 179 FEHflHPYPKDSDKVLLAKQTGLTRSQVSNWFINARVR 216
                     554459******************************88 PP
2BELL116.99.6e-3836107172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +rqelq+kkakL s+l+eV++rY+qy++q+q++ ssFe++ag gs+k+Yt+lAl++iS++FrcLkdai++qi
  XP_015866356.1  36 QRQELQMKKAKLASMLDEVEHRYRQYHHQMQIITSSFEQAAGFGSSKSYTALALQTISKQFRCLKDAISSQI 107
                     69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.1E-351105IPR006563POX domain
PfamPF075261.9E-3710104IPR006563POX domain
PROSITE profilePS5007112.098157220IPR001356Homeobox domain
SMARTSM003892.5E-9160224IPR001356Homeobox domain
CDDcd000863.21E-11160221No hitNo description
SuperFamilySSF466898.13E-17161226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28163226IPR009057Homeodomain-like
PfamPF059201.7E-17177216IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKMNRESTPA NGGSSSGGGS GSGAGSKQPA ELTTAQRQEL QMKKAKLASM LDEVEHRYRQ  60
YHHQMQIITS SFEQAAGFGS SKSYTALALQ TISKQFRCLK DAISSQIKAT GKSLGEDDEE  120
CLGAKIEGSR LRYVDHQLRQ QRALQQLGMG MIQHNNNNAW RPQRGLPERA VSVLRAWLFE  180
HFLHPYPKDS DKVLLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEET KEQEQKDDTN  240
PQQDNNKNKG LLAVNKKTSS TSSNLQDHST AGAAADQISI AGSLSTSPMG VSNSSQLLQS  300
PSGLNVVGSK KRRSTSEILH SNISPTPTNS SILSMDMEYR KVMNETSERQ RQTNKDNTYN  360
SFITVATSEA ITTGFGAYPN NIGHDLGRFQ ASVDQFTPRF HGNNSGISLT LGLPHIDNNL  420
SLSGTQKSYL SNSNQNIPLG IRRMEEIGTR SEADQFFAVN QQPQSSQYST AGFENMDMQN  480
RKRFAAQLLP DFVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16166224563Homeobox protein Meis2
3k2a_B3e-16166224563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866356.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-120BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLW9R5A71e-164W9R5A7_9ROSA; BEL1-like homeodomain protein 1
STRINGXP_010089795.11e-165(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-114BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]