PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015865865.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 439aa MW: 48218.5 Da PI: 4.6268

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015865865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	231.5	3.9e-71	247	438	72	274
GRAS 72 knsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166 ++s e+l+++++ ++++P++kf+h+taNqaI ea+e e+rvH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s ++++etg+ L+ XP_015865865.1 247 SSSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEDRVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGP----SIDTVRETGRCLT 337 3489999*********************************************************************....9******** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 ++A++l+vpfef++ v ++ledl+++++ + gEalaVn+v +lhr++ +l ++L ++++ P++v++veqea+hn++ Fl rfleal XP_015865865.1 338 ELAHSLHVPFEFHA-VGEELEDLKPHMFYRRVGEALAVNSVNRLHRVP--GNCLG----NLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEAL 425 **********.7********9999***********9..44444....5******************************* PP GRAS 262 eyysalfdsleak 274 +y+ a+fdsl+a+ XP_015865865.1 426 HYFPAIFDSLDAT 438 ********876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.075	157	439	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-68	247	438	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MDQQQSSLTP PSLNFPTLKF DLDGDLEVQS PDNSSLWESL FSDQFDSDFM ILSPVRNLPS 60 PRQTSNYNYN NNYNYAQSMQ GQSLLGCSPP RFGSQVGAAF SSRGKGLSPL HRVFNSPNNN 120 NGSSSNQYMQ HTDTFALQAI EDFLDDYQRD GFVVGGFNKM TGMAGGGGNS SSEQSYDIPT 180 PPTLDCLAIP NSSSSSRFCG SASETSSGPG GSQVTQEGGG YQMGTIGPGA PLSEQLRQER 240 REDNFPSSSL EVLKIYQIVY QACPYVKFAH FTANQAIFEA FEAEDRVHVI DLDILQGYQW 300 PAFMQALAAR PSGAPFLRIT GVGPSIDTVR ETGRCLTELA HSLHVPFEFH AVGEELEDLK 360 PHMFYRRVGE ALAVNSVNRL HRVPGNCLGN LLTMIRDQAP NIVTLVEQEA SHNGPYFLGR 420 FLEALHYFPA IFDSLDATQ

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MDQQQSSLTP PSLNFPTLKF DLDGDLEVQS PDNSSLWESL FSDQFDSDFM ILSPVRNLPS  60
PRQTSNYNYN NNYNYAQSMQ GQSLLGCSPP RFGSQVGAAF SSRGKGLSPL HRVFNSPNNN  120
NGSSSNQYMQ HTDTFALQAI EDFLDDYQRD GFVVGGFNKM TGMAGGGGNS SSEQSYDIPT  180
PPTLDCLAIP NSSSSSRFCG SASETSSGPG GSQVTQEGGG YQMGTIGPGA PLSEQLRQER  240
REDNFPSSSL EVLKIYQIVY QACPYVKFAH FTANQAIFEA FEAEDRVHVI DLDILQGYQW  300
PAFMQALAAR PSGAPFLRIT GVGPSIDTVR ETGRCLTELA HSLHVPFEFH AVGEELEDLK  360
PHMFYRRVGE ALAVNSVNRL HRVPGNCLGN LLTMIRDQAP NIVTLVEQEA SHNGPYFLGR  420
FLEALHYFPA IFDSLDATQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-49	247	438	90	280	Protein SCARECROW
5b3h_A	3e-49	247	438	89	279	Protein SCARECROW
5b3h_D	3e-49	247	438	89	279	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015865865.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024924028.1	0.0	scarecrow-like protein 9
Swissprot	G7L166	1e-124	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A2N9HND7	1e-176	A0A2N9HND7_FAGSY; Uncharacterized protein
STRING	XP_010110925.1	1e-125	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9470	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-55	RGA-like 1

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]