PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc10146.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 75aa MW: 8545.79 Da PI: 9.9493 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 71.7 | 1.3e-22 | 1 | 74 | 300 | 374 |
GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 cega+r+erhe++ +Wr+r+++aGF++ p++ +a++a+ l+k++ + gy+v ee+g+lvlgWk++ ++++S+W+ Zjn_sc10146.1.g00010.1.am.mk 1 CEGAARVERHERADQWRRRMSRAGFQSTPIR--MATKAREWLEKHAdGGGYTVAEEKGCLVLGWKGKHVIATSCWK 74 9****************************96..67899*******98899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.803 | 1 | 55 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-20 | 1 | 74 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
CEGAARVERH ERADQWRRRM SRAGFQSTPI RMATKAREWL EKHADGGGYT VAEEKGCLVL 60 GWKGKHVIAT SCWKC |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367029 | 2e-74 | AK367029.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2050E06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008676175.2 | 4e-40 | DELLA protein RGL3 | ||||
Refseq | XP_015690691.1 | 9e-41 | PREDICTED: uncharacterized protein LOC107303918 | ||||
Refseq | XP_025814052.1 | 4e-40 | DELLA protein RGL1-like | ||||
TrEMBL | A0A0D9YIT1 | 3e-40 | A0A0D9YIT1_9ORYZ; Uncharacterized protein | ||||
STRING | Pavir.J09064.1.p | 4e-42 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-18 | RGA-like 1 |