PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc08321.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 234aa MW: 25788.6 Da PI: 7.0094 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 214.9 | 4.2e-66 | 19 | 234 | 80 | 298 |
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegpp.slRiTgvgspesgsk 155 al l +e++P+l+f+h +aN Ilea+ege+ vH++D+++ ++G QW Ll+ L +R++g+p ++RiTgvg+ Zjn_sc08321.1.g00010.1.am.mk 19 ALALAYELCPYLRFAHYVANASILEAFEGESNVHVVDLGMtlglEHGHQWRRLLDGLKNRAGGKPaRVRITGVGA----PL 95 556779*******************************97622226889*************77666*********....99 PP GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 ++++++g+ L+ +A++lgv +ef++ v ++le+l++++L v+ +Ea+a+n++l+lh +++es + +vL+++++lsP Zjn_sc08321.1.g00010.1.am.mk 96 DTMKAVGRELEAYAATLGVFLEFRA-VDRSLESLHIDDLGVRGDEAVAINSILELHCVVKESRGALN---SVLQTIRKLSP 172 *************************.799******************************88877777...8********** PP GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 k +v+veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr + r+ vE++ +g ei+nvv Zjn_sc08321.1.g00010.1.am.mk 173 KAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYDARRARVEQFHFGAEIRNVV 234 ************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.779 | 1 | 234 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-63 | 19 | 234 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAFCIPRLCA GRDGTRGEAL ALAYELCPYL RFAHYVANAS ILEAFEGESN VHVVDLGMTL 60 GLEHGHQWRR LLDGLKNRAG GKPARVRITG VGAPLDTMKA VGRELEAYAA TLGVFLEFRA 120 VDRSLESLHI DDLGVRGDEA VAINSILELH CVVKESRGAL NSVLQTIRKL SPKAFVLVEQ 180 DAGHNGPFFL GRFMEALHYY AALFDALDAA LPRYDARRAR VEQFHFGAEI RNVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-41 | 27 | 234 | 87 | 296 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003791 | 0.0 | AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12. | |||
GenBank | AP006757 | 0.0 | AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814052.1 | 1e-148 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2S3HNZ9 | 1e-147 | A0A2S3HNZ9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DCV4 | 1e-147 | A0A2T7DCV4_9POAL; Uncharacterized protein | ||||
STRING | Si000959m | 1e-146 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-38 | RGA-like 1 |