PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc07224.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 155aa MW: 17048.5 Da PI: 9.3314 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.9 | 1.1e-12 | 1 | 31 | 15 | 45 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgk 45 kR+ gi+KKA+E+ Cda+vav+ifs+ gk Zjn_sc07224.1.g00010.1.am.mk 1 KRKSGIFKKASEIILRCDARVAVVIFSKAGK 31 9***************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.124 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-13 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-8 | 1 | 16 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-12 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0011 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-8 | 16 | 37 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
KRKSGIFKKA SEIILRCDAR VAVVIFSKAG KPYALGSPSV DDVLRLVDVH EDGAPAQQLS 60 SDVVCERGVP AQQVTAVAER AAAEAMVRQH EDTKALVAAE QLRVRTVGDR VMQAAAGRRF 120 WWGADVEKLG AAELPEFTRA LQQLRDNLHR HIERV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811768.1 | 3e-42 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1E5UM65 | 3e-39 | A0A1E5UM65_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2S3HIR9 | 6e-41 | A0A2S3HIR9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DXP1 | 6e-41 | A0A2T7DXP1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J16245.1.p | 5e-39 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-15 | AGAMOUS-like 61 |