PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc04122.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 120aa MW: 13021.6 Da PI: 11.5408

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc04122.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.7	2.2e-12	27	87	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l++ Zjn_sc04122.1.g00010.1.am.mk 27 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKGLELRNAELEQRVSTLQNENNTLRQI 87 78899***************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-12	26	90	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.7E-11	27	88	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.967	28	91	IPR004827	Basic-leucine zipper domain
CDD	cd14704	8.57E-15	31	81	No hit	No description
SuperFamily	SSF57959	4.25E-12	31	88	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-16	31	90	No hit	No description
PROSITE pattern	PS00036	0	33	48	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
QQHPAAETQG PQPPAAGKKR GRAPGDKEQN RLKRLLRNRV SAQQARERKK AYLTELEAKA 60 KGLELRNAEL EQRVSTLQNE NNTLRQILKN TTAHAGKRAG GGGAGAKGGD GGKKHHFTKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	22	GKKRGRA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT017937	1e-118	BT017937.1 Zea mays clone EL01N0520G04.c mRNA sequence.
GenBank	EU958008	1e-118	EU958008.1 Zea mays clone 1640173 transcription factor HY5 mRNA, complete cds.
GenBank	EU976642	1e-118	EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968380.1	4e-52	transcription factor HY5
Swissprot	Q9SM50	5e-35	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A3L6SSD3	1e-55	A0A3L6SSD3_PANMI; Transcription factor HY5-like
STRING	Pavir.Eb00436.1.p	1e-51	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1408	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	1e-32	bZIP family protein

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]