PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00209.1.g00300.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 183aa    MW: 19800.8 Da    PI: 8.3114
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00209.1.g00300.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000784365123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C++ F++   L  H  +H
  Zjn_sc00209.1.g00300.1.sm.mk 43 FVCKTCNRAFPSFQALGGHRASH 65
                                  89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.49E-841107No hitNo description
PfamPF139122.9E-124267IPR007087Zinc finger, C2H2
SMARTSM003550.234365IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8064370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SMARTSM003555.185107IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-885109IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKRFAVQEGE MARVLMLMSH GQRQDQPLPV TGRGDRRAPE RVFVCKTCNR AFPSFQALGG  60
HRASHKKPRL DVDGDDLALG KPKLHGCSVC GLEFAIGQAL GGHMRRHRAM TGGAMPPVIV  120
VDKKPDAVVD VRGDGVKRGL WLDLNHPPCD DAEAECGHIN AAAGITLHQF LDTGTMAVDC  180
LGY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9683334e-78EU968333.1 Zea mays clone 319090 ZFP16-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809105.13e-99zinc finger protein ZAT12-like
TrEMBLA0A2T7E7966e-98A0A2T7E796_9POAL; Uncharacterized protein
TrEMBLA0A3L6T0T36e-98A0A3L6T0T3_PANMI; Zinc finger protein ZAT12-like
STRINGSi023353m3e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.14e-25C2H2 family protein