PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00194.1.g00320.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 328aa MW: 35851 Da PI: 10.6237 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 101 | 119 | 3 | 21 |
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cg++F+ ++ L rH Zjn_sc00194.1.g00320.1.sm.mk 101 CRVCGRRFRERDALLRHFE 119 *****************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.988 | 99 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MLPPLSNLRR RLMATAPKFL APPLLRSLST TAAPPARKPT TAVAILWDLA ASRPPSTLPL 60 YDAAVRLHLA ATSFGRLHLS AAFLHPSHRL HGPAAVSTHL CRVCGRRFRE RDALLRHFEA 120 IHTREHAKRL ARIDSARGGR RVRLAAALSL KLSNYEKAAR ELAAAAAGPA SPADELRRAG 180 VRAELTRTPA ASFRERAQQV LDERSVDCLM LVSAREELVS LLPVAKERGV RSVVIGGESG 240 LARWADVGFS WSDVVAGKAR KAAPSVSEKW RDRDVLKGLE WRYEGDDDEE VVVLEDTDED 300 SVDKLVGRAK GRPWWKLDSD GEGSSVGG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823075.1 | 1e-168 | uncharacterized protein LOC112898963 | ||||
TrEMBL | A0A3L6PUC9 | 1e-168 | A0A3L6PUC9_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J22986.1.p | 1e-163 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12234 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 2e-42 | C2H2 family protein |