PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00179.1.g00270.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 19435.1 Da PI: 7.1479 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 76.5 | 4.7e-24 | 70 | 129 | 1 | 60 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamss 60 +CaaCk+lrr+C++ Cvlapyfp ++p kfa +h++FGasn++kll++lpee+r da+++ Zjn_sc00179.1.g00270.1.am.mk 70 PCAACKILRRRCVDRCVLAPYFPPTDPLKFATAHRVFGASNIIKLLQELPEEHRADAVAA 129 7******************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.972 | 69 | 170 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-23 | 70 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MAPPRRASPP SALQVKSKAQ QATHMDLVSH APTTMDESSA CTVVATPPPQ HGPSTPPASP 60 QPAAAVVLSP CAACKILRRR CVDRCVLAPY FPPTDPLKFA TAHRVFGASN IIKLLQELPE 120 EHRADAVAAA SSSPAPYCAV DYSSHLAAAV APAAAQAAAD ALYVVDGAGA GGLQLHASAV 180 SWGDESLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-22 | 69 | 129 | 10 | 70 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-22 | 69 | 129 | 10 | 70 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 2e-40 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960340.1 | 2e-42 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-34 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A1E5VX41 | 5e-44 | A0A1E5VX41_9POAL; LOB domain-containing protein 1 | ||||
TrEMBL | A0A3L6SZG8 | 4e-44 | A0A3L6SZG8_PANMI; LOB domain-containing protein 1 | ||||
STRING | Si024430m | 7e-42 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-29 | LOB domain-containing protein 11 |