PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00179.1.g00140.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 95aa MW: 10639.2 Da PI: 9.0369 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00067 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cg + s ks+ + H H Zjn_sc00179.1.g00140.1.am.mkhc 22 YKCEFCGVVRSKKSLIRAHVLEH 44 9**************99999985 PP | |||||||
2 | zf-C2H2 | 26.5 | 1.6e-08 | 68 | 89 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk+F+ + +Lk+H+++H Zjn_sc00179.1.g00140.1.am.mkhc 68 ECEKCGKRFKKPVHLKQHMQSH 89 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.78E-9 | 20 | 89 | No hit | No description |
SMART | SM00355 | 9.4 | 22 | 44 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.113 | 67 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0023 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.6E-7 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 7.5E-6 | 68 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MAGTTVATAG TTPAPVRDVR RYKCEFCGVV RSKKSLIRAH VLEHHKDDVD GVEAYQGCGV 60 PSKELIQECE KCGKRFKKPV HLKQHMQSHS LETTY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566649.1 | 2e-32 | transcription factor IIIA isoform X1 | ||||
TrEMBL | A0A3L6RD09 | 1e-31 | A0A3L6RD09_PANMI; Uncharacterized protein | ||||
STRING | BRADI2G37790.1 | 6e-32 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17974 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 2e-18 | transcription factor IIIA |