PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00155.1.g00600.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 195aa MW: 22735.8 Da PI: 8.065 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 71 | 90 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C Cg++F + +Lk+H++ Zjn_sc00155.1.g00600.1.sm.mkhc 71 RCLECGTCFQKPAHLKQHMQ 90 7*****************96 PP | |||||||
2 | zf-C2H2 | 24.5 | 6.7e-08 | 98 | 122 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s++rk++L+rH+ tH Zjn_sc00155.1.g00600.1.sm.mkhc 98 FNCPleDCPFSYKRKDHLNRHMLTH 122 78**********************9 PP | |||||||
3 | zf-C2H2 | 16.7 | 2e-05 | 127 | 152 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C++sFs k n++rH + H Zjn_sc00155.1.g00600.1.sm.mkhc 127 FSCTvdGCDRSFSIKANMQRHVKEfH 152 899*******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 12 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 1.4 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.448 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-6 | 71 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.05E-11 | 82 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-8 | 97 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 6.2E-6 | 98 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.1E-4 | 98 | 122 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 98 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 100 | 122 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.99E-9 | 108 | 157 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.9E-10 | 125 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 127 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.219 | 127 | 157 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 129 | 152 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MCSADEFDGE KKVGKTVCKD IRRYKCDFCN VVRSKKCLIQ AHMVEHHKDE LDKSEIYNSN 60 GGKIVHEVEQ RCLECGTCFQ KPAHLKQHMQ CHSQERLFNC PLEDCPFSYK RKDHLNRHML 120 THQGKSFSCT VDGCDRSFSI KANMQRHVKE FHEGGNTAKS KQQFVCKEEG WRLRGDRCAI 180 AITFQRWTEE ESVDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf3_A | 1e-14 | 74 | 152 | 10 | 89 | TRANSCRIPTION FACTOR IIIA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795605.1 | 2e-93 | transcription factor IIIA-like isoform X1 | ||||
TrEMBL | A0A2T7F0W9 | 3e-93 | A0A2T7F0W9_9POAL; Uncharacterized protein | ||||
STRING | Si020193m | 2e-88 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP67767 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 3e-39 | transcription factor IIIA |