PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00155.1.g00290.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 713aa    MW: 75949.3 Da    PI: 6.2619
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00155.1.g00290.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.11.8e-31522606186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpy
  Zjn_sc00155.1.g00290.1.sm.mk 522 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSARMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PSQAKTCPY 601
                                   8*********************************************************************8.77778**** PP

                      trihelix  82 fdqle 86 
                                   fd+l+
  Zjn_sc00155.1.g00290.1.sm.mk 602 FDELD 606
                                   ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.236515579IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.6E-4519578IPR009057Homeodomain-like
SMARTSM007170.0065519581IPR001005SANT/Myb domain
PfamPF138374.0E-23521608No hitNo description
CDDcd122038.55E-30521586No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDSAF AMSAPPPPQP AQPPPPTAGG QELGGPFRYQ PLHHHALPPQ  60
HHHHHAPLMP PHFAHFAGGG IPFTQQLLHQ AATAAGHHPH LQLFQEQHHH HHHHKPPQPP  120
PPQQQQQQPT RWAPQHPHPH PHHLGFDVEA AVPESSGAAG GSTASGGGAT PGVPPFLAAA  180
MNFKLAVDAG GGSAATGGTD DALNDGGGSG MMLHVGGAGA DDEAATESRL RRWPGDEETS  240
IKEPTWRPLD IDYLHSTSSS KRTGKEKAPT PESPAPAAAA AASYFKKGDD SAAAAASAGG  300
GNYKLFSELE AIYKPGSGGT AGAQTGSGSG LTGDDNVILE PAMPDLPGPE AGDAPQLNTS  360
DTSAGEDVAA VVQRQPQPSS DTTRRKRKRR RQEHLSASAS FFERLVQRLM EHQESLHRQF  420
LEAMERRERE RAARNEEWRR QEAEKFAREA AARAQDRASA AAREAAIIAY LEKLSGESIN  480
LPPPAAPSAE DISQDAVGKE LVAYEGGEAA GGSGALHLST SRWPKHEVEA LIRVRTGLEG  540
RFQEPGLKGP LWEEVSARMA AAGYGRSAKR CKEKWENINK YFRKAKESGK KRPSQAKTCP  600
YFDELDRLYS RSSSGNANAG SAGGSGGGAG DEHDAKASSE LLDAVVKYPE GPPGFVYDDK  660
DPSSVDAKAP NSEVLRKEGE EGGIGSGRAT DDPEPEDHQI QVEERHGEDD QHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383388RRKRKR
2384389RKRKRR
3384390RKRKRRR
4385390KRKRRR
5386390RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819158.10.0trihelix transcription factor GT-2-like
TrEMBLA0A0A9A7X80.0A0A0A9A7X8_ARUDO; Uncharacterized protein
STRINGSb04g000520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-38Trihelix family protein