PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00152.1.g00410.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 298aa MW: 34525.2 Da PI: 8.9142 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.2e-05 | 71 | 92 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cg +F + +Lk+H+++H Zjn_sc00152.1.g00410.1.sm.mkhc 71 RCLECGACFQKPAHLKQHMQRH 92 7********************9 PP | |||||||
2 | zf-C2H2 | 21.8 | 5e-07 | 98 | 122 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ ++rk++L+rH+ tH Zjn_sc00152.1.g00410.1.sm.mkhc 98 FNCPleDCPFIYKRKDHLNRHMLTH 122 78**********************9 PP | |||||||
3 | zf-C2H2 | 12.6 | 0.00042 | 127 | 152 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C+ C+ +Fs k n++rHi+ H Zjn_sc00152.1.g00410.1.sm.mkhc 127 FNCTvdGCDSRFSIKANMQRHIKEfH 152 679999*****************988 PP | |||||||
4 | zf-C2H2 | 19.6 | 2.5e-06 | 164 | 188 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+ksF+ +s Lk+H +H Zjn_sc00152.1.g00410.1.sm.mkhc 164 FVCKeqGCNKSFKYSSKLKKHEESH 188 89*******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 12 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.489 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.092 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.4E-6 | 71 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.23E-10 | 82 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.7E-8 | 97 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.224 | 98 | 127 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.8E-4 | 98 | 122 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 100 | 122 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.07E-8 | 109 | 159 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.0E-9 | 125 | 154 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.429 | 127 | 157 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 127 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 129 | 152 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.9E-8 | 161 | 188 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.17E-5 | 162 | 189 | No hit | No description |
PROSITE profile | PS50157 | 10.72 | 164 | 188 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0046 | 164 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 166 | 188 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.77E-5 | 197 | 236 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-7 | 197 | 236 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.141 | 214 | 240 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.2 | 214 | 240 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 216 | 240 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MCSGDEFDGG KSVGKTVYKD IRRYKCDFCD VVRSKKCLIQ AHMVEHHKDE LDKSETHNSN 60 GEKIVHQVEQ RCLECGACFQ KPAHLKQHMQ RHSQERLFNC PLEDCPFIYK RKDHLNRHML 120 THQGKLFNCT VDGCDSRFSI KANMQRHIKE FHEDENAVKS NQQFVCKEQG CNKSFKYSSK 180 LKKHEESHVR LNYVEVKSNL TKHMKACHDQ LKPFSCRFAG CGKAFTYKHV RDKHEQSSAH 240 LYVEGDFEEV DAQLHSRSRG GRKRKALTVE TLTRKRVTIP SEPSATDNGL AEIRSTPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 7e-21 | 61 | 239 | 2 | 160 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 7e-21 | 61 | 239 | 2 | 160 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795605.1 | 1e-157 | transcription factor IIIA-like isoform X1 | ||||
TrEMBL | A0A2T7F0W9 | 1e-156 | A0A2T7F0W9_9POAL; Uncharacterized protein | ||||
STRING | Si020193m | 1e-149 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2382 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-58 | transcription factor IIIA |