PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00148.1.g00040.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 338aa MW: 37524.9 Da PI: 6.0042

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00148.1.g00040.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.2	2e-50	32	162	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 pGfrFhPtdeelv++yL++kv+gk+l++ e+ike+diyk++PwdLp +++ + +kewyfF+ r +ky+++ r+nr+t Zjn_sc00148.1.g00040.1.am.mkhc 32 LPGFRFHPTDEELVTFYLQRKVDGKRLSI-EIIKEFDIYKHDPWDLPkASTISMDKEWYFFCLRGRKYRNSIRPNRVTG 109 69*************************.89***********445555789******************* PP NAM 80 sgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+Wkatg d++++s+ g+ +glkk+Lvfy+g+a kg+kt+W+mhe+rl Zjn_sc00148.1.g00040.1.am.mkhc 110 SGFWKATGVDRPIHSAaagrAGACIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 162 ***********977766667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-54	31	189	IPR003441	NAC domain
PROSITE profile	PS51005	54.579	31	189	IPR003441	NAC domain
Pfam	PF02365	2.2E-25	33	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGFSKMKSDH GRQGEEEVVL VGDEDEGEDL VLPGFRFHPT DEELVTFYLQ RKVDGKRLSI 60 EIIKEFDIYK HDPWDLPKAS TISMDKEWYF FCLRGRKYRN SIRPNRVTGS GFWKATGVDR 120 PIHSAAAGRA GACIGLKKSL VFYRGSAGKG TKTEWMMHEF RLPPRPETAG SSPSSHEAEV 180 WTICRIFRRS LAYKKQPQSM STGNAATVSV LAQPADSSSN TGSLESDTGD DEYMNGLSPL 240 APPNNTNVRN AYDSYQFHGQ WNNGVVPMPP AWSCAETQPS PAMSSAFYHG PHGAHSSSLT 300 TSSPDDECYK GGCSWEDIGR MVMELADDPS VFYDCTFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-47	33	195	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-47	33	195	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-47	33	195	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-47	33	195	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-47	33	195	22	174	NAC domain-containing protein 19
3swm_B	4e-47	33	195	22	174	NAC domain-containing protein 19
3swm_C	4e-47	33	195	22	174	NAC domain-containing protein 19
3swm_D	4e-47	33	195	22	174	NAC domain-containing protein 19
3swp_A	4e-47	33	195	22	174	NAC domain-containing protein 19
3swp_B	4e-47	33	195	22	174	NAC domain-containing protein 19
3swp_C	4e-47	33	195	22	174	NAC domain-containing protein 19
3swp_D	4e-47	33	195	22	174	NAC domain-containing protein 19
4dul_A	3e-47	33	195	19	171	NAC domain-containing protein 19
4dul_B	3e-47	33	195	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803594.1	1e-148	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	8e-79	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2S3GVN7	1e-147	A0A2S3GVN7_9POAL; Uncharacterized protein
STRING	Si030477m	1e-143	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-79	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]