PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00143.1.g00680.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 304aa MW: 30733.2 Da PI: 10.6641

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00143.1.g00680.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.7	5.9e-40	56	149	2	94
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss Zjn_sc00143.1.g00680.1.am.mk 56 PPKRSSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSS 136 789******************************************************************999888888888 PP TCP 82 asnsssgkaaksa 94 +s+ s++++ ++a Zjn_sc00143.1.g00680.1.am.mk 137 GSSFSIPAHLRAA 149 8877777555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.8E-39	61	181	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	62	116	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDITGDTGGG RRPNFPLQLL EKKEEQPSST SPAAAGRPNG SAAAQGGELQ VRKVAPPKRS 60 STKDRHTKVD GRGRRIRMPA ICAARVFQLT RELGHKTDGE TIEWLLQQAE PAVIAATGTG 120 TIPANFTSLN ISLRSSGSSF SIPAHLRAAG LPGSRFGGAR GDAWDRVVGL GFGGGGAEGP 180 ASATSSASSP LLLSFHSGSV AAAGGGTESI WTFPQSGSGG AATVYRGVPS GLHFMNFPAP 240 MALIPGGQQL GLAAPVGSGT DNGGGGEGHM GVLAALNASR AQAVTVAAQN GAEGSNQQQQ 300 QQHQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054532	1e-127	BT054532.1 Zea mays full-length cDNA clone ZM_BFc0140K14 mRNA, complete cds.
GenBank	KJ726836	1e-127	KJ726836.1 Zea mays clone pUT3376 TCP transcription factor (TCP10) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655935.1	1e-105	PREDICTED: transcription factor TCP14-like
TrEMBL	A0A0A8Y7R2	1e-121	A0A0A8Y7R2_ARUDO; Uncharacterized protein
STRING	GRMZM2G142751_P01	1e-106	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	4e-47	TCP family protein