PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00141.1.g00460.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23528.9 Da PI: 4.5253 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 39 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p +k+ r++lg+f tae Aa+a++ a+++l+g Zjn_sc00141.1.g00460.1.sm.mk 39 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 90 68****************9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.4E-14 | 39 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-20 | 40 | 100 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.313 | 40 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 40 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-25 | 40 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MENNMGDDNQ GAEGEYATVM SVPPKRPAGR TKFRETRHPV YRGVRRRGPA GRWVCEVREP 60 NKKSRIWLGT FATAEAAARA HDVAALALRG RAACLNFADS ARLLRVDPAT LTTPEDIRRA 120 AIDLAEALCQ RDAASSSGAA VVDAAAAAAP RTAYQEDETA PYDEAMYGNM EFDHSYYYDG 180 MGGGCDWQNT SWNMDEDEDD DGTGGCGGCD ITLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 38 | 97 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB627353 | 1e-126 | AB627353.1 Zoysia japonica gene for CBF, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964394.1 | 1e-67 | dehydration-responsive element-binding protein 1C | ||||
Swissprot | A2Y8S6 | 1e-63 | DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C | ||||
Swissprot | Q9LWV3 | 1e-63 | DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A1E5W5R3 | 1e-73 | A0A1E5W5R3_9POAL; Peroxisomal membrane protein 11-5 | ||||
STRING | OPUNC06G01430.1 | 2e-71 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 1e-30 | dehydration response element B1A |
Publications ? help Back to Top | |||
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