PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00140.1.g00440.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 27801.1 Da PI: 8.2201 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.7 | 4.4e-18 | 70 | 159 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 fkv p+ + rl +p f e+ ++ ++ ++l+ +sg +Wev l + +s++ +t+GWkeF+ ++ L +g f+v Zjn_sc00140.1.g00440.1.sm.mk 70 FKVYFPEQS--AVRLKIPPAFH-EYvKEA--PDRVVSLKGPSGHTWEVVL--TSGSQGLSFTQGWKEFACDHSLLAGHFMV 143 555544433..34799*****8.562444..3458***************..***************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F++dg+sef v vf++ Zjn_sc00140.1.g00440.1.sm.mk 144 FTYDGQSEF--SVDVFSA 159 ****99999..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.056 | 67 | 160 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-21 | 67 | 161 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-19 | 68 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.12E-17 | 69 | 158 | No hit | No description |
SMART | SM01019 | 5.6E-14 | 69 | 160 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-15 | 78 | 159 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRKNPQGGS GAAPAAAATE RGKGKRTKEG SAGRKERRSG REQRKVTEAA RGEEEEEEGG 60 APVAAGEQFF KVYFPEQSAV RLKIPPAFHE YVKEAPDRVV SLKGPSGHTW EVVLTSGSQG 120 LSFTQGWKEF ACDHSLLAGH FMVFTYDGQS EFSVDVFSAS GVKDKAAPNV EPRKEPVIKQ 180 EEEQDCVVDM DALDTPQVSA DLPPVEVDRR NTRKRVRQMN DAMEGDTALK TKGQSSAQKK 240 HEKRKPKAAA EYPV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827675.1 | 8e-55 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_025827676.1 | 8e-55 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A3L6PN77 | 2e-54 | A0A3L6PN77_PANMI; B3 domain-containing protein | ||||
STRING | Pavir.J06349.1.p | 1e-51 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 6e-17 | B3 family protein |