PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00135.1.g00260.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 196aa MW: 22141.8 Da PI: 8.8949

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00135.1.g00260.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	35	58	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s + H H Zjn_sc00135.1.g00260.1.am.mkhc 35 FKCHVCHKKLSTASGMAIHVLQvH 58 89***************9987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50808	11.021	6	65	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	4.61E-5	11	60	No hit	No description
SMART	SM00355	2.8	11	34	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	13	34	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.1	35	58	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	37	58	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009910	Biological Process	negative regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046872	Molecular Function	metal ion binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGKKKKRVDK VFCYYCDREF DDEKILVQHQ KAKHFKCHVC HKKLSTASGM AIHVLQVHKE 60 SVTKVPNAKP GRESTEIEIF GMQGIPADVL AAHYGEEEDP SSKVAKVEVP QVRPVVMPTN 120 LLGMPFPPRP AYGVPPPMQA LQLQLLLELM EPMSKEERRL SLPKYQVHDE TSQMNSVDAA 180 IDRRISESRL AGRMAL

Functional Description ? help Back to Top
Source	Description
UniProt	Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694, ECO:0000269\|PubMed:19121105, ECO:0000269\|PubMed:21282526}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037992	1e-138	BT037992.1 Zea mays full-length cDNA clone ZM_BFb0206A01 mRNA, complete cds.
GenBank	EU962976	1e-138	EU962976.1 Zea mays clone 247018 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136975.1	5e-89	uncharacterized protein LOC100217135
Swissprot	Q9C5G0	2e-63	SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBL	A0A1D6EVF5	3e-88	A0A1D6EVF5_MAIZE; Protein SUPPRESSOR OF FRI 4
STRING	GRMZM2G081812_P01	3e-88	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6355	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	4e-65	C2H2 family protein

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645] Resentini F, et al. SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression. Plant Physiol., 2017. 173(1): p. 155-166 [PMID:27920160]