PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00128.1.g00420.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 153aa MW: 16984.1 Da PI: 8.5462 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.2 | 1e-14 | 24 | 83 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++ + + +++++e+ Zjn_sc00128.1.g00420.1.sm.mk 24 HRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARAADIAAQHQRVEQEN 83 58*****************************************99999999999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.8E-11 | 20 | 75 | No hit | No description |
SMART | SM00338 | 1.2E-16 | 21 | 85 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.128 | 23 | 86 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.1E-11 | 24 | 83 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.59E-9 | 25 | 70 | No hit | No description |
CDD | cd14702 | 1.27E-12 | 26 | 59 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 28 | 43 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSSSSLSPGG RLSRSDGDSA ADTHRREKRR LSNRESARRS RLRKQQHLDE LVQEVARLQA 60 ENARVAARAA DIAAQHQRVE QENTVLRARA AELGDRLRSV NEVLRVVEEF SGVAMDIQDE 120 LPVDDPLLRP WQLPCPAAAM PIGGATAAHM LQY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 43 | RRSRLRK |
2 | 37 | 44 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055634 | 1e-146 | BT055634.2 Zea mays full-length cDNA clone ZM_BFc0087G10 mRNA, complete cds. | |||
GenBank | KJ727603 | 1e-146 | KJ727603.1 Zea mays clone pUT5463 bZIP transcription factor (bZIP48) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808697.1 | 8e-93 | ocs element-binding factor 1 | ||||
Swissprot | P24068 | 3e-88 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | A0A2T7EHZ0 | 3e-92 | A0A2T7EHZ0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6R976 | 3e-92 | A0A3L6R976_PANMI; Ocs element-binding factor 1 | ||||
STRING | Pavir.Cb00560.1.p | 2e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1886 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 2e-27 | basic region/leucine zipper motif 53 |
Publications ? help Back to Top | |||
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