PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00115.1.g00300.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 425aa    MW: 47933.1 Da    PI: 7.0476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00115.1.g00300.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031209231323
                                     ET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                                     C+  +Cgk+F + s L++H  +H
  Zjn_sc00115.1.g00300.1.sm.mkhc 209 CSyeNCGKTFVDVSALRKHAHVH 231
                                     77779**************9887 PP
2zf-C2H2171.7e-05286311123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     y+Cp   C+k + +++ L+ H++t H
  Zjn_sc00115.1.g00300.1.sm.mkhc 286 YVCPyeGCDKAYIHSYKLNLHLKTmH 311
                                     99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.46E-7202245No hitNo description
Gene3DG3DSA:3.30.160.601.6E-13202233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.013207231IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.385207236IPR007087Zinc finger, C2H2
PROSITE patternPS000280209231IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-6281311No hitNo description
Gene3DG3DSA:3.30.160.604.1E-10282311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0031286311IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016286316IPR007087Zinc finger, C2H2
PROSITE patternPS000280288311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDGHATMTET QRLAEVERER QLLLQEARVP AMAQEYARHA LQLRALSPII DFDLKQGGLH  60
YNRMSYFDAR HSTWMRTPHG PMRYTDRVST DAHQYRPCRG VNIFAVKIAS SDIGFPIHVY  120
GTVIARDNID ERSRIMEGRT KNEQRMYHDR RHSTTAVGED PPRSRGLRWE CSLFKWVRAD  180
GHRSSKENHN GLEAEAPKPE PTSEILFLCS YENCGKTFVD VSALRKHAHV HGERQYICQE  240
PNCGKTGAPV AVQHTSPLPP PPPVEKPQSS MKSSTAATAS YAERPYVCPY EGCDKAYIHS  300
YKLNLHLKTM HPEHGQEENG KHTAAGHHAV NEPTYQFNYT EIADVAPNPK RSKTTSAHKS  360
SSSKVHNVKV SSAMPTNTGC GRSQWSGKAT YEDDSEETEE DPGNNLEGGW RYGSNADDDE  420
TQDEY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809834.11e-110zinc finger transcription factor YY1-like
TrEMBLA0A3L6RD381e-110A0A3L6RD38_PANMI; Putative zinc finger protein
STRINGPavir.Ca00534.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-26C2H2 family protein