PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00115.1.g00280.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 387aa    MW: 43111.8 Da    PI: 8.2305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00115.1.g00280.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002793115323
                                     ET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                                     C+  +Cgk+F + s L++H  +H
  Zjn_sc00115.1.g00280.1.sm.mkhc  93 CSyeNCGKTFVDVSALRKHAHVH 115
                                     77779**************9887 PP
2zf-C2H2193.8e-06120144123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     y C+  +Cgk F ++s LkrH  tH
  Zjn_sc00115.1.g00280.1.sm.mkhc 120 YICQepNCGKKFVDSSKLKRHHLTH 144
                                     889999****************999 PP
3zf-C2H220.61.2e-06150174123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     + Cp  dCgk Fs   nL++H++tH
  Zjn_sc00115.1.g00280.1.sm.mkhc 150 FICPhpDCGKAFSLDFNLRSHLKTH 174
                                     78**********************9 PP
4zf-C2H2130.00032180204123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     + Cp   Cgk+F++   Lk H + H
  Zjn_sc00115.1.g00280.1.sm.mkhc 180 HICPfpACGKRFTSDFKLKAHVKAH 204
                                     5799999***************998 PP
5zf-C2H216.52.4e-05247272123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     ++Cp   C+k + +++ L+ H++t H
  Zjn_sc00115.1.g00280.1.sm.mkhc 247 FVCPyeGCDKAYIHSYKLNLHLKTmH 272
                                     89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-1386117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.38591120IPR007087Zinc finger, C2H2
SMARTSM003550.01391115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-894144No hitNo description
Gene3DG3DSA:3.30.160.601.2E-12118140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.274120149IPR007087Zinc finger, C2H2
SMARTSM003550.0053120144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122144IPR007087Zinc finger, C2H2
SuperFamilySSF576677.69E-13131183No hitNo description
Gene3DG3DSA:3.30.160.606.1E-18141177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653150179IPR007087Zinc finger, C2H2
SMARTSM003550.0019150174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-8178204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.93180209IPR007087Zinc finger, C2H2
SMARTSM003550.018180204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
SuperFamilySSF576673.61E-6242272No hitNo description
Gene3DG3DSA:3.30.160.604.0E-10243272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.829247277IPR007087Zinc finger, C2H2
SMARTSM003550.0055247272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEYLPPAAAA GSGGYRQYYQ QQPHSQALRR APPRPAARWV KQWIPQDLAA SGGKCSLFKW  60
VRADGHRSSK ENHKGLEAEA PKPEPTSEIL FLCSYENCGK TFVDVSALRK HAHVHGERQY  120
ICQEPNCGKK FVDSSKLKRH HLTHTGQKDF ICPHPDCGKA FSLDFNLRSH LKTHAAENYH  180
ICPFPACGKR FTSDFKLKAH VKAHEKTGAP VAVQHTPPPP PPPPLEKSQS SMKSSTAATA  240
SYAERPFVCP YEGCDKAYIH SYKLNLHLKT MHPEHGQEEN GKHTAASHHA VNETTYQYNY  300
AEIADTAPNP KRSKTSSAHK SSSSKVHNVK VSSAMPNNIS GVRNQWSGKA TYEDDSEETE  360
EDPGNNNLEG GWRYGSNADD DETQDEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-34932068119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960546.10.0zinc finger transcription factor YY1
TrEMBLK3Z7430.0K3Z743_SETIT; Uncharacterized protein
STRINGSi022363m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.19e-92C2H2 family protein