PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00109.1.g00650.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 446aa    MW: 46753.1 Da    PI: 6.7886
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00109.1.g00650.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.94.9e-33189244359
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                                    v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkCaACgCHRnFHR+ev++
  Zjn_sc00109.1.g00650.1.am.mk 189 VVKYRECLKNHAAAMGGNATDGCGEFMPS-GEEGSLEALKCAACGCHRNFHRKEVDD 244
                                   589*************************9.999*********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.9E-30190242IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-23191241IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-30191242IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.086192241IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.83E-17295364IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-27297365IPR009057Homeodomain-like
TIGRFAMsTIGR015658.6E-26306362IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MLAPMAEAAE PGYLAPLPCF FVLTKQHGSS SSMFLCVWSQ ERRAKNRRGG MDLSGNQGDL  60
PIPMQAPASP NASGLVLLPS PPAAVTEELG NNNNGNEALV LLPSPPAAEM EEEHGNNKNG  120
NEAAPVLLPS PPAAATEEEQ GNNSNGNEAP VLLPSPPAAA ATEEEESSGL KKPAAVSVTG  180
AIGTGAGPVV KYRECLKNHA AAMGGNATDG CGEFMPSGEE GSLEALKCAA CGCHRNFHRK  240
EVDDDAVNVV DAGHGNGGSY GHRLTDPYAA MHAPPPLHHH QLVNAVPLSA VHTAEPGARG  300
SASSMKRFRT KFSAEQKARM LAFAERAGWR LTNMDEGAVQ AFCQEIGVRR PVLKVWMHNN  360
KYTLGSKRLQ APPVPAAAAS PPPPPPPPQM LMPMVPPPPP PSSPQHEGLS FIHLGGPSSP  420
PPPQQMMMPM APPFRRSPGS PPLKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-233043611673ZF-HD homeobox family protein
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126192e-60CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-52homeobox protein 22