PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00107.1.g00520.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 567aa    MW: 60750.7 Da    PI: 8.861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00107.1.g00520.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-12290339355
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a++   +v+YIk+Lq
  Zjn_sc00107.1.g00520.1.am.mk 290 TSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASVIGGVVNYIKELQ 339
                                   68*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.303287338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-12290351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16290363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.04E-13290343No hitNo description
SMARTSM003532.0E-11293344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.696501567IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
LCWCLPRWPR RPRRSGALLD AAYLDPVYSL RRPDQARLQI FVTLLVMASP AGTFNVDALA  60
RVQNWAACVV RESAGTHVLT LHLYLRRSPL FRFVQARSDG HQLSLKFSPR AHAWPKAEAR  120
VHGALPISYT SMRIPYSCIY VLPIPSRLIY EPSSILMSPT NDATVYLLLP QTRMAEALCD  180
QLFADDVLDG ELHHHPSDAE DLFGILEAWE DCVSGGSSVN TPRGGGGGGV DARGSKRRPP  240
QGGCDVDSRD PDDGSSMVVQ GPAKRQRCSP APVAVVSTAG EGGAGKATAT SHIAVERNRR  300
KQMNEHLAVL RSLMPCFYVK RGDQASVIGG VVNYIKELQQ LLQSLEAKKQ RKAYADQVLS  360
PRPPPAPRPP LPFKSTPPMS PRPAVPISPR TPPTTSSSPY NKLICRQPSL SLPLPLPLPL  420
PLPLPLPPAP GSAYASPATT PTTSQESAAA ASSYLPSLDA IAAELCAYAA NGKQQATAPA  480
GGGGVVVLPE VKVEFSGANL VVKTVSQRAP GQAVKVIAAL EGRSLEILHA KISTVDDTAV  540
NSFTIKIGIE CDLSAEELVQ EIQQAFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437061.11e-149transcription factor SPEECHLESS
TrEMBLA0A1E5UP881e-148A0A1E5UP88_9POAL; Transcription factor SPEECHLESS
STRINGPavir.Db01402.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-33bHLH family protein