PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00105.1.g00730.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 133aa MW: 14725.8 Da PI: 10.2352 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 96.9 | 4.6e-30 | 12 | 126 | 22 | 137 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + vsvP +s+++vvtvrCGhCt+llsvnl + q l+ ++hl+e+++++ + + +++++++ + ++ +s++ + Zjn_sc00105.1.g00730.1.sm.mkhc 12 MQVSVPGNSVLTVVTVRCGHCTNLLSVNLLGLThQSLPQQEHLQENIRPQGTING-TSRDQFDHLEFGSS-SSAKFRLP 88 679*************************976552889**********99855443.34444555544443.34444555 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeei 137 ++ + +++ ++++ + r PekrqrvPsaynrfi i Zjn_sc00105.1.g00730.1.sm.mkhc 89 MMYSAQNDLLQEQALAARAPEKRQRVPSAYNRFINGHI 126 56555555555556699*****************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-27 | 12 | 126 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MVGNKRTKVI SMQVSVPGNS VLTVVTVRCG HCTNLLSVNL LGLTHQSLPQ QEHLQENIRP 60 QGTINGTSRD QFDHLEFGSS SSAKFRLPMM YSAQNDLLQE QALAARAPEK RQRVPSAYNR 120 FINGHIIQTS ILG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442565.1 | 3e-47 | protein YABBY 6 | ||||
Swissprot | Q2QM17 | 3e-31 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A0A8Y151 | 1e-47 | A0A0A8Y151_ARUDO; Uncharacterized protein | ||||
STRING | Sb08g022030.1 | 1e-46 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-20 | YABBY family protein |