PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00104.1.g00810.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 652aa MW: 69859.6 Da PI: 8.7455

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00104.1.g00810.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85	6.9e-27	508	557	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ++d++kyF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl Zjn_sc00104.1.g00810.1.am.mk 508 DQIGFDDIRKYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 557 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.087	491	578	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-21	510	557	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
LEASRLLVKR EPSVGEAALR LPAAARGFLM SRACAVVQAA VSRVACCPSP LSPSCLCHAR 60 IHVGSRRLAH GRGGHQGRVG GGSGLGAAMA GNGTGVRGHN VPNFKREGDC GSAVDRSLAR 120 ENNIDQHDAE LSVAACMASA RTPPRFCDAC AAAKLNRSPW LGKAANAPAA GRPHHPATPA 180 TMGRHARTRG KFLRPPSNSD SAARTLLPVL LYPQIFGPCA ASVSLSISAM AMVPYALDGG 240 DADWYPDLDD GFPLLRSSSS PFDIRSVLHR SPFQFQYILG FSGEEDNLLS AVAPPGPPRG 300 LIRDSNLEGS DHSPLLLPAD FSASSACLDV ISIGWFSRDE DSYRLPMFPA AVPPAAGDQF 360 YFDGLPPLPA TIATAGVLDD VLMLQPFSDI DLDAFGGSAD VNNAAPPDNN MMIVPSDRPC 420 AAGQVAGVDG LGNKHVATAA DCYHPVAASS FGFNMAVMRH GEHQNQASSV VALPPPPPMP 480 RPHHQVRMRS MRSGTDRSAP PAGKTRLDQI GFDDIRKYFY MPITKAAREM NVGLTVLKKR 540 CRELGVARWP HRKMKSLKSL ILNVQEMGKG MSPAAVRREL AALETYCALM EEDPSIELTD 600 RTKKLRQACF KESYKRRRAA RRFGRADQLT VQEASSSNDD GCSLQSSHIF SY

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

LEASRLLVKR EPSVGEAALR LPAAARGFLM SRACAVVQAA VSRVACCPSP LSPSCLCHAR  60
IHVGSRRLAH GRGGHQGRVG GGSGLGAAMA GNGTGVRGHN VPNFKREGDC GSAVDRSLAR  120
ENNIDQHDAE LSVAACMASA RTPPRFCDAC AAAKLNRSPW LGKAANAPAA GRPHHPATPA  180
TMGRHARTRG KFLRPPSNSD SAARTLLPVL LYPQIFGPCA ASVSLSISAM AMVPYALDGG  240
DADWYPDLDD GFPLLRSSSS PFDIRSVLHR SPFQFQYILG FSGEEDNLLS AVAPPGPPRG  300
LIRDSNLEGS DHSPLLLPAD FSASSACLDV ISIGWFSRDE DSYRLPMFPA AVPPAAGDQF  360
YFDGLPPLPA TIATAGVLDD VLMLQPFSDI DLDAFGGSAD VNNAAPPDNN MMIVPSDRPC  420
AAGQVAGVDG LGNKHVATAA DCYHPVAASS FGFNMAVMRH GEHQNQASSV VALPPPPPMP  480
RPHHQVRMRS MRSGTDRSAP PAGKTRLDQI GFDDIRKYFY MPITKAAREM NVGLTVLKKR  540
CRELGVARWP HRKMKSLKSL ILNVQEMGKG MSPAAVRREL AALETYCALM EEDPSIELTD  600
RTKKLRQACF KESYKRRRAA RRFGRADQLT VQEASSSNDD GCSLQSSHIF SY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003933	5e-65	AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBank	AP004258	5e-65	AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBank	AP014957	5e-65	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	5e-65	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815472.1	1e-90	uncharacterized protein LOC112892548
TrEMBL	A0A3L6R484	3e-87	A0A3L6R484_PANMI; Uncharacterized protein
TrEMBL	A0A3L6SLA0	2e-87	A0A3L6SLA0_PANMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12888	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-33	RWP-RK domain-containing protein