PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00103.1.g01110.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 209aa MW: 21868.9 Da PI: 8.6106

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00103.1.g01110.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk F + L H ++H Zjn_sc00103.1.g01110.1.sm.mk 70 FRCAVCGKAFASYQALGGHKSSH 92 89**********99999999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.8E-12	69	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.471	70	92	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.0E-8	70	142	No hit	No description
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.7E-10	120	143	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.53	120	142	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.245	120	147	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MVAGLDSLMD PTALSLALPA PTVRKEDYLA ICLAALAGTR GTGLKGLLAR HQEQAAPAAA 60 PFAKEEELRF RCAVCGKAFA SYQALGGHKS SHRRPLTADQ LVAAAVPADV DSADVTGGPH 120 RCTICRKGFA TGQALGGHKR CHYWDGATSV SLSVSAASAS GSGTGSSAVT VRNFDLNLMP 180 VPENAGMKRW AEEDEVQSPL PLKKRRMAE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269\|PubMed:25071223}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269\|PubMed:25071223}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797129.1	2e-86	zinc finger protein 36-like
Swissprot	Q75KE5	3e-69	ZFP36_ORYSJ; Zinc finger protein 36
TrEMBL	A0A3L6TJN8	9e-89	A0A3L6TJN8_PANMI; Zinc finger protein 1-like
STRING	Pavir.J37325.1.p	2e-84	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3412	32	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	2e-27	salt tolerance zinc finger

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Zhang H, et al. A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice. J. Exp. Bot., 2014. 65(20): p. 5795-809 [PMID:25071223] Li W, et al. A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance. Cell, 2017. 170(1): p. 114-126.e15 [PMID:28666113]