PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00102.1.g01330.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 408aa    MW: 42537.6 Da    PI: 6.1685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00102.1.g01330.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.2e-131147339
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                                  i n ++r  tf+kR++g+ KKA EL +LC+++va++ 
  Zjn_sc00102.1.g01330.1.am.mk 11 IPNRRQRVNTFAKRKEGLTKKAGELATLCGVRVALVC 47
                                  679999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.652146IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-12161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-17182IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-6323IPR002100Transcription factor, MADS-box
CDDcd002661.76E-19380No hitNo description
PfamPF003194.0E-131147IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MPRRKISMGL IPNRRQRVNT FAKRKEGLTK KAGELATLCG VRVALVCGFA DGVGAADVWE  60
SEPGVLNAYR DLPPEERAKH THRAYAEAEL RKAEVKLVRV RQEGPAALAP GDAAVYALTM  120
EDARRVLAAV DDALRAVNAR RAALGLPLDD GGGGGIGIGL HRGSGVDAFA ATGASDAAAV  180
PRGIAAPAPS FAGSNLVGID GYLLGAQGNN NANEQQVMWD GGFDPCSAAV NWHPAGYAIQ  240
PCTADIDGAY KLQHMAADMY GNNNNNSDSI GRLPWDAFHL PTNAVAGYGV EFTGAGNSYV  300
GGMPSYLTPP VLSNADLPLR YPSLEMRVNY LDAPAAQQQG VGGLSLAGSN FNFIGTLDNF  360
INAPQAQPLA LSYHGGLVNA NDYASQWPSA GQLWGAAGSD PGTSRSVA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.13e-12AGAMOUS-like 86