PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00092.1.g01850.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 134aa MW: 14976 Da PI: 10.8443 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 74.8 | 2.9e-23 | 53 | 88 | 135 | 170 |
YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +eiqrika+nPdishreafsaaaknWahfP+ihfgl Zjn_sc00092.1.g01850.1.am.mk 53 DEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 88 69********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-21 | 53 | 88 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MLCVTRGAQA TVCWFSRPRQ RRRPRWRQQD RAGTPGPGGR SESFCRGRES PLDEIQRIKA 60 GNPDISHREA FSAAAKNWAH FPHIHFGLMP DHHGLKKTNL LPQEYQRKDG LLKEGLYTAA 120 AAAAAAANMG VTPY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 26 | RPRQRRRPRWR |
2 | 20 | 27 | RRRPRWRQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091994 | 1e-77 | FP091994.1 Phyllostachys edulis cDNA clone: bphyem110b24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613818.1 | 5e-42 | protein YABBY 3 isoform X1 | ||||
Refseq | XP_025876472.1 | 3e-42 | protein YABBY 3 isoform X2 | ||||
Swissprot | Q8L556 | 4e-43 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | B8BHT1 | 5e-43 | B8BHT1_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9G6J8 | 2e-41 | B9G6J8_ORYSJ; Uncharacterized protein | ||||
STRING | OGLUM10G15140.1 | 2e-41 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-31 | YABBY family protein |
Publications ? help Back to Top | |||
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