PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00088.1.g02540.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 352aa    MW: 36969.9 Da    PI: 9.7942
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00088.1.g02540.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022258280123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C k+F++   L  H r+H
  Zjn_sc00088.1.g02540.1.am.mk 258 HECHVCRKTFPTGQALGGHKRRH 280
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.4E-12196219IPR007087Zinc finger, C2H2
SMARTSM003550.08196218IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.468196223IPR007087Zinc finger, C2H2
SuperFamilySSF576679.58E-8196218No hitNo description
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
SuperFamilySSF576679.58E-8253280No hitNo description
PfamPF139121.3E-11258282IPR007087Zinc finger, C2H2
SMARTSM003550.13258280IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162258280IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MLQDRRHLPS WRAGNRGLSA APQLGRTRPG QSCACVELAR RAGSRGLWAV PQLGSARPGR  60
SCAWVEWAMS GWAVTRTSDL PVQALLVNTA PAGCGDVSAS NSSYSTTLPR GCFDRQEKAM  120
AVDAIIDATV AAATSSDQEV EASTSSMVTV KRRRSRPPKR LPRKEPTEEE YLALCLVMLS  180
RGRRGAGPEG DDLLIHACSV CGKAFASYQA LGGHKASHRN PAPPAKEDQK PPSPPSSSSA  240
RSASGNDKAP SAAATALHEC HVCRKTFPTG QALGGHKRRH YDGTLGSAAA PARSSSSSKL  300
GEGISRAAAR AAAPVGFIDL NLPALPEPCA AQDEDEVLSP LACKKPRLMI PA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557421e-33EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808181.15e-56zinc finger protein 1-like
SwissprotQ424303e-39ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A2S3HEY61e-54A0A2S3HEY6_9POAL; Uncharacterized protein
STRINGSb08g019490.11e-47(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-31zinc-finger protein 2