PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00088.1.g00850.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 199aa MW: 21960.8 Da PI: 7.9553 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216.9 | 6.4e-67 | 5 | 167 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveee 80 ++ +e+vCyv+CnfCnt+lavsvP +s+++vvtvrCGhCt+llsvnl + q l+ +++l+e+++++ + ++++ Zjn_sc00088.1.g00850.1.sm.mkhc 5 TMAPAEHVCYVHCNFCNTVLAVSVPGNSVLTVVTVRCGHCTNLLSVNLLGLAnQSLPQQEQLQENIRPQGIINGTSHDQ 83 56789******************************************97765489************997766655554 PP YABBY 81 nlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + + ++s++ + + ++ + e+ ++++ + rPPekrqrvPsaynr eei+rika+nPdishreafs+aakn Zjn_sc00088.1.g00850.1.sm.mkhc 84 -FGHLEFGSSSSKFQLP--MMYSAENGHLQEHALATRPPEKRQRVPSAYNR---EEIRRIKANNPDISHREAFSTAAKN 156 .5555555444444444..4555666666666778***************7...************************* PP YABBY 160 WahfPkihfgl 170 Wah+P+ihfgl Zjn_sc00088.1.g00850.1.sm.mkhc 157 WAHYPNIHFGL 167 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.6E-65 | 8 | 167 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MSAQTMAPAE HVCYVHCNFC NTVLAVSVPG NSVLTVVTVR CGHCTNLLSV NLLGLANQSL 60 PQQEQLQENI RPQGIINGTS HDQFGHLEFG SSSSKFQLPM MYSAENGHLQ EHALATRPPE 120 KRQRVPSAYN REEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLSSP GREVGKKLVD 180 ETVAAVTTPD PTNKIQGFY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274018 | 4e-44 | AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds. | |||
GenBank | AK104918 | 4e-44 | AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence. | |||
GenBank | CT829139 | 4e-44 | CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence. | |||
GenBank | CT830040 | 4e-44 | CT830040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA015F11, full insert sequence. | |||
GenBank | FJ940195 | 4e-44 | FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804908.1 | 4e-97 | protein YABBY 6-like isoform X2 | ||||
Swissprot | Q2QM17 | 2e-80 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A0A8Y151 | 1e-104 | A0A0A8Y151_ARUDO; Uncharacterized protein | ||||
STRING | Sb08g022030.1 | 6e-96 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-53 | YABBY family protein |